FC932275

Overview
NameFC932275
Unique NameFC932275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_NEUCR (Protein transport protein sec-13 OS=Neurospora crassa GN=sec-13 PE=3 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 8.438e-47
Identity = 90/186 (48.39%), Postives = 122/186 (65.59%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSG---FLDPVQKLCSGGCDNTVKVW 651
            +GH+D +HD  +DYYG+RLAT SSD +IKI  +   + + +  L GH GAVW VAWAHPK+G+ILAS  +DG V+IW+E  +  W +   F  HK+SVN + W+PHE G  LAC SSDGN+SV   + D  W+   I  AH +GV SVSWAP+T PG++V S         ++  +GG DN +K+W
Sbjct:   11 SGHDDMIHDAVLDYYGRRLATCSSDRTIKIFEIEGESQRLVETLKGHDGAVWSVAWAHPKYGNILASAGYDGKVLIWRE-QAGSWQRIFDFALHKASVNIVSWSPHEAGCLLACASSDGNVSVLEFK-DNSWE-HNIFHAHGLGVNSVSWAPATTPGSIVSSNPGPGSTGNRRFVTGGSDNLLKIW 193          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_PICPG (Protein transport protein SEC13 OS=Pichia pastoris (strain GS115) GN=SEC13 PE=3 SV=3)

HSP 1 Score: 185.652 bits (470), Expect = 1.880e-46
Identity = 91/186 (48.92%), Postives = 116/186 (62.37%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            I   H+D +HD  +DYYG+RLAT SSD +IKI  +     + +  L GH+G VW+VAWAHPKFG ILASCS+DG V+IWKE N   W K      H++SVNS+ WAPHE G  L C SSDG IS+   + DGG     + Q H +GV + SWAP + P         D  ++  SGGCDN VK+W+
Sbjct:    4 IGNAHDDLIHDAVLDYYGRRLATCSSDKTIKIFEIDGENQRLVETLIGHEGPVWQVAWAHPKFGVILASCSYDGKVLIWKEDN-GVWNKVAEHSVHQASVNSVSWAPHEYGPVLLCASSDGKISIVEFK-DGGALEPIVIQGHAIGVNAASWAPISLP---------DNTRRFVSGGCDNLVKIWR 178          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_ASPTN (Protein transport protein sec13 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec13 PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.880e-46
Identity = 94/193 (48.70%), Postives = 124/193 (64.25%), Query Frame = 1
Query:  103 TGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVW 651
            +GHED +HD  +DYYG+RLAT SSD +IK+  +     + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  L C SSDG++SV   + D  W T +I  AH +GV S+SWAP+ APG+L+ S    P Q  +  +GG DN +K+W
Sbjct:   10 SGHEDMIHDAGLDYYGRRLATCSSDKTIKVFEIEGEAHRLVETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNTTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLGCASSDGHVSVLEFQ-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLI-SANPGPGQQRRFVTGGSDNLLKIW 199          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_PICGU (Protein transport protein SEC13 OS=Pichia guilliermondii GN=SEC13 PE=3 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.143e-46
Identity = 93/186 (50.00%), Postives = 113/186 (60.75%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 651
            I   H++ +HD  +DYYGKRLAT SSD +IKI  V G    Q    L GH+G VW+VAWAHPKFGSILASCS+DG V++WKE     W      + H++SVNS+ WAPHELG  L C SSDG +SV     D G  T  I +AH +GV S SWAP              PV++  +GG DN  KVW
Sbjct:    4 IANAHDELIHDAVLDYYGKRLATCSSDKTIKIFEVEGTENYQLTETLVGHEGPVWQVAWAHPKFGSILASCSYDGKVLVWKESPDRSWSIISEHKVHQASVNSVSWAPHELGAVLLCTSSDGRVSVVDFN-DDGTSTHIIFEAHKIGVNSASWAPVDTK---------SPVRRFVTGGSDNLAKVW 179          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_LODEL (Protein transport protein SEC13 OS=Lodderomyces elongisporus GN=SEC13 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.078e-45
Identity = 96/192 (50.00%), Postives = 123/192 (64.06%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE-GNSNEW--IKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVG--SGFLDPVQKLCSGGCDNTVKVWK 654
            I   HED +HD  +DYYGKRLAT SSD +IKI  + G    +  A L+GH+G +W+VAWAHPKFGSILASCS+DG V+IWKE  ++ +W  I +H    H++SVNS+ WAPHELG  L C SSDG +SV     D G  +  I  AH +GV S SWAP TA  +     +  L   ++  + G DN VK+WK
Sbjct:    4 IGNAHEDLIHDAVLDYYGKRLATCSSDKTIKIYDIEGTENYKLTATLTGHEGPIWQVAWAHPKFGSILASCSYDGKVLIWKEQQDTQQWSIIAEHTI--HQASVNSVSWAPHELGAVLLCTSSDGKVSVVDFN-DDGTTSHVIFDAHAIGVNSASWAPFTAASSTSSKDANTLKQHRRFVTCGSDNLVKIWK 192          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_CHAGB (Protein transport protein SEC13 OS=Chaetomium globosum GN=SEC13 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 88/180 (48.89%), Postives = 118/180 (65.56%), Query Frame = 1
Query:  121 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPV---QKLCSGGCDNTVKVW 651
            +HD  +DYYG+RLAT SSD +IKI  +   T +    L GH GAVW V+WAHPK+G+ILAS  +DG V+IW+E N   W + + F  HK+SVN + W+PHE G  LAC SSDGN+SV   + +  W+ S I  AH +GV SVSWAP+T PG++V S         ++  +GG DN +K+W
Sbjct:    2 IHDAVLDYYGRRLATCSSDRTIKIFEIEGETQRLTETLKGHDGAVWCVSWAHPKYGNILASAGYDGKVLIWREQN-GAWQRIYDFSLHKASVNVVSWSPHEAGCVLACASSDGNVSVLEFKDNNSWEHS-IFHAHGLGVNSVSWAPATNPGSIVSSKPSPKSTGNRRFVTGGSDNALKIW 179          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SC131_CANGA (Protein transport protein SEC13-1 OS=Candida glabrata GN=SEC131 PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 4.630e-45
Identity = 90/187 (48.13%), Postives = 116/187 (62.03%), Query Frame = 1
Query:   94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            +I   H D +HD  +DYYGK+LAT SSD +IKI  V   + + +  L GH+G VW V WAHPKFG+ILASCS+DG VIIWKE N + W +  V   H +SVNS+ WAPHE G  L   SSDG +SV   + + G  T  I  AH +GV + SWAP+T  G          V++  +GG DN VK+W+
Sbjct:    3 EIANAHNDLIHDAVLDYYGKKLATCSSDKTIKIFEVEGESHKLVDTLVGHEGPVWRVDWAHPKFGTILASCSYDGKVIIWKEEN-DRWSQIAVHAVHTASVNSVQWAPHEYGALLLAASSDGKVSVVEFK-ENGTATPLIFDAHAIGVNAASWAPATVEGGNNPGEAPKEVRRFVTGGADNLVKIWR 187          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_ASPFU (Protein transport protein sec13 OS=Aspergillus fumigatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.047e-45
Identity = 93/186 (50.00%), Postives = 120/186 (64.52%), Query Frame = 1
Query:  124 HDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN--------EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVW 651
            HD  +DYYG+RLAT SSD +IKI  +   T + +  L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E + N         W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ +PG+L+ S    P Q  +  +GG DN +K+W
Sbjct:   14 HDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLIETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQNATSPVAGSTWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAASPGSLISSN-PGPGQQRRFVTGGSDNLLKIW 196          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_ASPCL (Protein transport protein sec13 OS=Aspergillus clavatus GN=sec13 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.031e-44
Identity = 93/187 (49.73%), Postives = 120/187 (64.17%), Query Frame = 1
Query:  121 VHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGN--------SNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQ--KLCSGGCDNTVKVW 651
            +HD  +DYYG+RLAT SSD +IKI  +   T +    L GH+GAVW VAWAHPKFG+ILAS S+DG V+IW+E +         + W K   F  H +SVN + WAPHE G  LAC SSDG++SV   R D  W T +I  AH +GV S+SWAP+ APG+L+ S    P Q  +  +GG DN +K+W
Sbjct:    2 IHDAGLDYYGRRLATCSSDKTIKIFEIEGETHRLAETLKGHEGAVWCVAWAHPKFGTILASSSYDGKVLIWREQHQSPTSPAAGSAWTKVFDFSLHTASVNMVSWAPHESGCLLACASSDGHVSVLEFR-DNSW-THQIFHAHGMGVNSISWAPAAAPGSLISSN-PGPGQQRRFVTGGSDNLLKIW 185          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEC13_YEAST (Protein transport protein SEC13 OS=Saccharomyces cerevisiae GN=SEC13 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.759e-44
Identity = 92/186 (49.46%), Postives = 116/186 (62.37%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            I   H + +HD  +DYYGKRLAT SSD +IKI  V   T + +  L+GH+G VW V WAHPKFG+ILASCS+DG V+IWKE N   W +  V   H +SVNS+ WAPHE G  L   SSDG +SV   + +G      ID AH +GV S SWAP+T       +G  +  +K  +GG DN VK+WK
Sbjct:    4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKES-RKFVTGGADNLVKIWK 186          
The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SEC13_NEUCR8.438e-4748.39Protein transport protein sec-13 OS=Neurospora cra... [more]
SEC13_PICPG1.880e-4648.92Protein transport protein SEC13 OS=Pichia pastoris... [more]
SEC13_ASPTN1.880e-4648.70Protein transport protein sec13 OS=Aspergillus ter... [more]
SEC13_PICGU7.143e-4650.00Protein transport protein SEC13 OS=Pichia guillier... [more]
SEC13_LODEL2.078e-4550.00Protein transport protein SEC13 OS=Lodderomyces el... [more]
SEC13_CHAGB4.630e-4548.89Protein transport protein SEC13 OS=Chaetomium glob... [more]
SC131_CANGA4.630e-4548.13Protein transport protein SEC13-1 OS=Candida glabr... [more]
SEC13_ASPFU6.047e-4550.00Protein transport protein sec13 OS=Aspergillus fum... [more]
SEC13_ASPCL1.031e-4449.73Protein transport protein sec13 OS=Aspergillus cla... [more]
SEC13_YEAST1.759e-4449.46Protein transport protein SEC13 OS=Saccharomyces c... [more]

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Properties
Property NameValue
Genbank descriptionC34206G07EF PostHarveN Citrus clementina cDNA clone C34206G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTG
GAAAGCT
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