FC932275
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.485e-40 Identity = 87/193 (45.08%), Postives = 111/193 (57.51%), Query Frame = 1 Query: 94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKE---GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654 KIE HE +H A++YYG RLAT SSD ++KI + NN+S L L GH+G VW W HP G ++LA+C +DG V+IWKE G + I H H +SVN + WAPHE GL L CGS+DG ISV + T +D AH GV S+SWAP + V++ SGG DN VK+WK Sbjct: 3 KIENAHEGVIHHAALNYYGTRLATCSSDKTVKIFEINDVNNSSSLLETLVGHEGPVWYADWCHPSLGENLLATCGYDGKVLIWKESGHGGKMQIIGKHAV--HSASVNCVKWAPHEYGLILLCGSADGKISVVELKDGQIASTKILDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWK 193
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28 Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ N + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ +P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.146e-27 Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ N + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ +P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27 Identity = 69/189 (36.51%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ N H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ +P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27 Identity = 69/189 (36.51%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ AP VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHAPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27 Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG----VTSVSWAPSTA----PGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + V+ A + S+ H V + +SW PS++ P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVY--EAPDVMNLSQWSLQHEVSCKLCCSCISWNPSSSRAHPPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2) HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27 Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 567 + I H+D +HDV+ D++G+R+AT SSD S+K+ G++ H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ WIK D ++SV + +AP +GL L S+DG + ++ A + S+ H + + +SW PS++ Sbjct: 5 KSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLACSCISWNPSSS 175
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1) HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27 Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ +P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3) HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27 Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603 + I H+D +HDV+ D++G+R+AT SSD S+K+ + H A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ W+K D ++SV + +AP +GL LA S+DG + ++ A + S+ H + + +SW PS+ +P VGS P Sbjct: 5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26 Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1 Query: 91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588 + I H+D +HDV+ D++G+R+AT SSD S+K+ +N + A H G+VW V WAHP+FG +LASCSFD T +W+E G SN+ WIK D ++SV + +AP +GL L S+DG + ++ A + S+ H + + +SW PS+ +P VGS Sbjct: 5 RSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186 The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 66
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bpback to top |