FC932275

Overview
NameFC932275
Unique NameFC932275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SC132_CANGA (Protein transport protein SEC13-2 OS=Candida glabrata GN=SEC132 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.485e-40
Identity = 87/193 (45.08%), Postives = 111/193 (57.51%), Query Frame = 1
Query:   94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVG--NNTSQHLAKLSGHKGAVWEVAWAHPKFG-SILASCSFDGTVIIWKE---GNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            KIE  HE  +H  A++YYG RLAT SSD ++KI  +   NN+S  L  L GH+G VW   W HP  G ++LA+C +DG V+IWKE   G   + I  H    H +SVN + WAPHE GL L CGS+DG ISV   +      T  +D AH  GV S+SWAP     +         V++  SGG DN VK+WK
Sbjct:    3 KIENAHEGVIHHAALNYYGTRLATCSSDKTVKIFEINDVNNSSSLLETLVGHEGPVWYADWCHPSLGENLLATCGYDGKVLIWKESGHGGKMQIIGKHAV--HSASVNCVKWAPHEYGLILLCGSADGKISVVELKDGQIASTKILDNAHKFGVNSISWAPLMKTDSSDDGDETTAVKQFISGGNDNLVKIWK 193          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.717e-28
Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N + H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.146e-27
Identity = 69/189 (36.51%), Postives = 103/189 (54.50%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N + H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.496e-27
Identity = 69/189 (36.51%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     N   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.552e-27
Identity = 69/189 (36.51%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    AP   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHAPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.334e-27
Identity = 70/189 (37.04%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVG----VTSVSWAPSTA----PGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + V+   A    + S+    H V      + +SW PS++    P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVY--EAPDVMNLSQWSLQHEVSCKLCCSCISWNPSSSRAHPPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 4.354e-27
Identity = 64/173 (36.99%), Postives = 98/173 (56.65%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPSTA 567
            + I   H+D +HDV+ D++G+R+AT SSD S+K+   G++   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS++
Sbjct:    5 KSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLACSCISWNPSSS 175          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 120.939 bits (302), Expect = 5.686e-27
Identity = 68/189 (35.98%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGSGFLDP 603
            + I   H+D +HDV+ D++G+R+AT SSD S+K+     +   H  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       W+K     D ++SV  + +AP  +GL LA  S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS    P
Sbjct:    5 RSIAADHKDLIHDVSFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSP 191          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.822e-26
Identity = 67/184 (36.41%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL-AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKE--GNSNE-------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPV----GVTSVSWAPST----APGALVGS 588
            + I   H+D +HDV+ D++G+R+AT SSD S+K+    +N   +  A    H G+VW V WAHP+FG +LASCSFD T  +W+E  G SN+       WIK     D ++SV  + +AP  +GL L   S+DG + ++   A    + S+    H +      + +SW PS+    +P   VGS
Sbjct:    5 RSIAADHKDLIHDVSYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKTHSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIY--EAPDVMNLSQWSLQHEISCKLSCSCISWNPSSSRAHSPMIAVGS 186          
The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SC132_CANGA4.485e-4045.08Protein transport protein SEC13-2 OS=Candida glabr... [more]
SEH1B_XENLA6.717e-2836.51Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA1.146e-2736.51Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_XENTR1.496e-2736.51Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_BOVIN2.552e-2736.51Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE3.334e-2737.04Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
SEH1_DANRE4.354e-2736.99Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_PONAB5.686e-2735.98Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN5.686e-2735.98Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1_OSMMO2.822e-2636.41Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionC34206G07EF PostHarveN Citrus clementina cDNA clone C34206G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTG
GAAAGCT
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