FC932275

Overview
NameFC932275
Unique NameFC932275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_YEAST (Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SEH1 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.772e-20
Identity = 53/138 (38.41%), Postives = 78/138 (56.52%), Query Frame = 1
Query:   91 QKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS--GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNE------WIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA 480
            Q  ++GH+D VHDV  D+YG+ +AT SSD  IK+  +  +TS      S   H  ++  + WA P++G I+AS S+D TV +W+E    E      W K     D K S+ S+ +AP  LGL LAC  +DG + ++ A
Sbjct:    2 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDA 139          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: SEH1_SCHPO (Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=seh1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.188e-16
Identity = 46/138 (33.33%), Postives = 73/138 (52.90%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKG--AVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSN----EWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADG 492
            I+T H+D V+DV  D+YG+R+ + S+D  +K+    ++T           G  ++  VAWAHP FG +LA CS D  V I++E   N     W++     D +S+V  I + P + G  LA  S+D  + ++ A   G
Sbjct:    9 IQTNHQDLVNDVTYDFYGRRMVSCSADQRVKVYDFNDDTETWAITSEWRAGDASLMRVAWAHPSFGQVLAVCSLDRGVRIYEEQKKNFESKTWVEVAKLMDARSAVLDISFCPFQHGCKLAAVSADATLRIYEAMEPG 146          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_AEDAE (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Aedes aegypti GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.006e-15
Identity = 60/187 (32.09%), Postives = 89/187 (47.59%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            +  GH  T+ DVA    G+ LA+AS D ++ I    +   +  A L GH+  V  V+W+  K GS+LA+CS D +V +W+    +E+    V   H   V  ++W PHE    LA  S D  I ++    AD  W +     +H   V S+S+          GSG      +L S   D TVK+W+
Sbjct:   55 LSDGHSRTIRDVAWSPCGQYLASASFDATVAIWDKKSGEFECNATLEGHENEVKSVSWS--KSGSLLATCSRDKSVWVWEVAQEDEYECAAVLNTHTQDVKKVEWHPHE--DILASASYDNTIKLYKEDLADSDWSSFDTLVSHESTVWSISFD---------GSG-----NRLASCSDDQTVKIWQ 223          

HSP 2 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 46/142 (32.39%), Postives = 73/142 (51.41%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            L+GH+G  W   W HPK G++LA+C  D T+ IW E  S  W+   V  D H  ++  + W+P   G  LA  S D  ++++  ++ G ++ +   + H   V SVSW+ S   G+L+ +         CS   D +V VW+
Sbjct:   10 LTGHRGRAWGAGW-HPK-GNVLATCGEDKTIRIWAEDASQRWVAKTVLSDGHSRTIRDVAWSP--CGQYLASASFDATVAIWDKKS-GEFECNATLEGHENEVKSVSWSKS---GSLLAT---------CSR--DKSVWVWE 132          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIO1B_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-B OS=Salmo salar GN=ciao1b PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 61/186 (32.80%), Postives = 84/186 (45.16%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            ++ GH+ TV  VA    G  LA+AS D +  I    N+  + L  L GH+  V  VAWA    G++LA+CS D +V IW+    NE+    V   H   V  + W P +    LA  S D N+ V+    D  W+     + H    TS  W  +  P            Q+L S   D TVK+WK
Sbjct:   56 LQDGHQRTVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNLLATCSRDKSVWIWEVDEENEYECVSVVNSHTQDVKHVVWHPTQ--ELLASCSYDNNVCVY-KEEDDDWECRATLEGH----TSTVWGLTFDPSG----------QRLASCSDDCTVKIWK 222          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_CULQU (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Culex quinquefasciatus GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.227e-14
Identity = 56/192 (29.17%), Postives = 90/192 (46.88%), Query Frame = 1
Query:   82 MPPQKIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            +P   +  GH  T+ DVA    G+ LA+AS D ++ I    +   +  A L GH+  V  V+W+  K G++LA+CS D +V IW+    +E+    V   H   V  ++W P+E    LA  S D  I ++    AD  W +     +H   V S+++  S +              +L S   D TV++W+
Sbjct:   50 VPKTVLSDGHTRTIRDVAWSPCGRFLASASFDATVAIWDRRSGEFECNATLEGHENEVKSVSWS--KSGALLATCSRDKSVWIWEVAQEDEYECAAVLNTHSQDVKKVEWHPNE--DVLASASYDNTIQLYREDLADSDWSSFDTLASHDSTVWSIAFDASGS--------------RLASCSDDQTVRIWQ 223          

HSP 2 Score: 68.5514 bits (166), Expect = 3.349e-11
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 1
Query:  232 LSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFED-HKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            LSGH+G VW   W HP+   +LA+C  D T+ IW +  +  W+   V  D H  ++  + W+P   G  LA  S D  ++++  R+ G ++ +   + H   V SVSW+ S   GAL+ +         CS   D +V +W+
Sbjct:   10 LSGHRGRVWGAGW-HPR-DPVLATCGEDKTIRIWADDGTGRWVPKTVLSDGHTRTIRDVAWSP--CGRFLASASFDATVAIWDRRS-GEFECNATLEGHENEVKSVSWSKS---GALLAT---------CSR--DKSVWIWE 132          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROWI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila willistoni GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 55/188 (29.26%), Postives = 85/188 (45.21%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ ++     G+ LA+AS D +  I    +   +  A L GH+  V  V+W+  K G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I +F   A D  WD +    +H   V S+ +    A G           ++L S   D T+K+W+A
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKEILASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDF---DADG-----------ERLVSCSDDTTLKIWRA 223          

HSP 2 Score: 69.707 bits (169), Expect = 1.503e-11
Identity = 51/183 (27.87%), Postives = 83/183 (45.36%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGV-GNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 651
            GH+  +  VA    G   A+   D +I+I  + GN+ S       GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+  + G  LA  S D ++ ++    D  ++ + +   H   V  V W P+               + L S   DNT+K++
Sbjct:   12 GHKGRIWGVAWHPKGNTFASCGEDKAIRIWSLSGNSWSTKTILSDGHKRTIREIRWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--KSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTK--------------EILASASYDNTIKMF 175          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROSI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila simulans GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 55/188 (29.26%), Postives = 83/188 (44.15%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTAR-ADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ ++     G+ LA+AS D +  I    +   +  A L GH+  V  V+W+  + G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I +F     D  WD +    +H    TS  W          G  F    ++L S   D T+K+WKA
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVW--HPTKDVLASASYDNTIKMFAEEPIDNDWDCTATLTSH----TSTVW----------GIDFDADGERLVSCSDDTTIKIWKA 223          

HSP 2 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 52/183 (28.42%), Postives = 81/183 (44.26%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLS-GHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 651
            GH+  +  VA    G   A+   D +I+I  +  NT      LS GHK  + E+ W+    G  LAS SFD T  IW + +S E+  +   E H++ V S+ W+    G  LA  S D ++ ++    D  ++ + +   H   V  V W P+                 L S   DNT+K++
Sbjct:   12 GHKGRIWGVAWHPKGNVFASCGEDKAIRIWSLTGNTWSTKTILSDGHKRTIREIRWS--PCGQYLASASFDATTAIWSK-SSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNPHTQDVKRVVWHPTK--------------DVLASASYDNTIKMF 175          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DANRE (Probable cytosolic iron-sulfur protein assembly protein ciao1 OS=Danio rerio GN=ciao1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.971e-13
Identity = 58/186 (31.18%), Postives = 83/186 (44.62%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            +  GH+ TV  VA    GK LA+AS D +  I    +   + L  L GH+  V  VAWA    GS+LA+CS D +V IW+    +E+    V   H   V  + W P +    LA  S D  I ++    D  W+     + H   V S+++ P                ++L S   D TVK+WK
Sbjct:   56 LSDGHQRTVRKVAWSPCGKYLASASFDATTCIWKKTDEDFECLTVLEGHENEVKCVAWA--PSGSLLATCSRDKSVWIWEVDEEDEYECLSVVNSHTQDVKHVVWHPTQ--ELLASASYDNKICIY-KEEDDDWECRATLEGHESTVWSLTFDPEG--------------RRLASCSDDRTVKIWK 222          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIO1A_SALSA (Probable cytosolic iron-sulfur protein assembly protein ciao1-A OS=Salmo salar GN=ciao1a PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.041e-12
Identity = 59/186 (31.72%), Postives = 82/186 (44.09%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            ++ GH+  V  VA    G  LA+AS D +  I    N+  + L  L GH+  V  VAWA    G+ LA+CS D +V IW+    +E+    V   H   V  + W P +    LA  S D N+ V+    D  W+     + H    TS  W  +  P            Q+L S   D TVK+WK
Sbjct:   56 LQDGHQRAVRKVAWSPCGNYLASASFDATTCIWKKKNDDFECLTVLEGHENEVKCVAWA--PSGNQLATCSRDKSVWIWEVDEEDEYECVSVVNSHTQDVKHVVWHPTQ--ELLASCSYDNNVCVY-KEEDDDWECRATLEGH----TSTVWGLTFDPSG----------QRLASCSDDRTVKIWK 222          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROER (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila erecta GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.360e-12
Identity = 54/188 (28.72%), Postives = 83/188 (44.15%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTA-RADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ ++     G+ LA+AS D +  I    +   +  A L GH+  V  V+W+  + G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I ++     D  WD +    +H    TS  W          G  F    ++L S   D T+K+WKA
Sbjct:   54 LSDGHKRTIREIRWSPCGQYLASASFDATTAIWSKSSGEFECNATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNSHTQDVKRVVW--HPTKEVLASASYDNTIKMYAEDPVDNDWDCTATLTSH----TSTIW----------GIDFDADGERLVSCSDDTTIKIWKA 223          
The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
SEH1_YEAST1.772e-2038.41Nucleoporin SEH1 OS=Saccharomyces cerevisiae GN=SE... [more]
SEH1_SCHPO1.188e-1633.33Nucleoporin seh1 OS=Schizosaccharomyces pombe GN=s... [more]
CIAO1_AEDAE1.006e-1532.09Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1B_SALSA4.227e-1432.80Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_CULQU4.227e-1429.17Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROWI7.971e-1329.26Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROSI7.971e-1329.26Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DANRE7.971e-1331.18Probable cytosolic iron-sulfur protein assembly pr... [more]
CIO1A_SALSA1.041e-1231.72Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROER1.360e-1228.72Probable cytosolic iron-sulfur protein assembly pr... [more]

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Properties
Property NameValue
Genbank descriptionC34206G07EF PostHarveN Citrus clementina cDNA clone C34206G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTG
GAAAGCT
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