FC932275

Overview
NameFC932275
Unique NameFC932275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10287 contig Ccv1_Contig10287:1..657. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_BOVIN (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Bos taurus GN=CIAO1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 53/183 (28.96%), Postives = 81/183 (44.26%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            GH+ TV  VA    G  LA+AS D +  I     +  + +  L GH+  V  VAWA    G++LA+CS D +V +W+    +E+    V   H   V  + W P +    LA  S D  + ++    D  W      + H   V S+++ PS               Q+L S   D TV++W+
Sbjct:   59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNEDDFECVTTLEGHENEVKSVAWA--PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ--ELLASASYDDTVKLYREEED-DWVCCATLEGHESTVWSLAFDPSG--------------QRLASCSDDRTVRIWR 222          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROVI (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila virilis GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.564e-11
Identity = 56/188 (29.79%), Postives = 84/188 (44.68%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ +V     G+ LA+AS D +  I      T    A L GH+  V  V+W+  + G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I +F   A D  WD +    +H   V S+ +    A G           ++L S   D T+K+W+A
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIWSKHECT----ATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVW--HPTKEVLASASYDNTIKMFAESALDSDWDCTATLSSHTSTVWSIDF---DADG-----------ERLVSCSDDATLKIWRA 219          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: HETE1_PODAN (Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 59/187 (31.55%), Postives = 85/187 (45.45%), Query Frame = 1
Query:  106 GHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDT-----SRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVW 651
            GH D+V  VA    G+R+A+ S D +IKI    + T      L GH G V  VA++    G  +AS S DGT+ IW   +          E H   V S+ ++P   G  +A GSSD  I +        WDT     ++  + H   V SV+++P                Q++ SG  DNT+K+W
Sbjct: 1091 GHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQ--TLEGHGGWVHSVAFSPD--GQRVASGSIDGTIKIWDAASGT---CTQTLEGHGGWVQSVAFSPD--GQRVASGSSDKTIKI--------WDTASGTCTQTLEGHGGWVQSVAFSPDG--------------QRVASGSSDNTIKIW 1246          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROMO (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila mojavensis GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.713e-11
Identity = 55/188 (29.26%), Postives = 84/188 (44.68%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ +V     G+ LA+AS D +  I      T    A L GH+  V  V+W+  + G +LA+CS D +V IW+    +E+    V   H   V  + W  H     LA  S D  I ++   A D  WD +    +H   V S+ +    A G           ++L S   D T+K+W+A
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAIWSKHECT----ATLEGHENEVKSVSWS--RSGGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHSQDVKRVVW--HPTKEILASASYDNTIKMYAESALDSDWDCTATLSSHTSTVWSIDF---DADG-----------ERLVSCSDDATLKIWRA 219          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CIAO1_DROGR (Probable cytosolic iron-sulfur protein assembly protein Ciao1 OS=Drosophila grimshawi GN=Ciao1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 56/190 (29.47%), Postives = 85/190 (44.74%), Query Frame = 1
Query:   97 IETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHL--AKLSGHKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARA-DGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWKA 657
            +  GH+ T+ +V     G+ LA+AS D +  I       S+H   A L GH+  V  V+W+    G +LA+CS D +V IW+    +E+    V   H   V  + W P +    LA  S D  I ++   A D  WD +    +H    TS  W+            F    ++L S   D T+K+W+A
Sbjct:   54 LSDGHKRTIREVRWSPCGEYLASASFDATTAI------WSKHECNATLEGHENEVKSVSWSQS--GGLLATCSRDKSVWIWEVAGDDEFECAAVLNAHTQDVKRVVWHPSK--EILASASYDNTIKMYAESALDSDWDCTATLSSH----TSTVWS----------IDFEADGERLVSCSDDTTLKIWRA 219          
BLAST of FC932275 vs. ExPASy Swiss-Prot
Match: CFD1_SCHJY (Probable cytosolic Fe-S cluster assembly factor SJAG_02895 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=SJAG_02895 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 55/188 (29.26%), Postives = 87/188 (46.28%), Query Frame = 1
Query:   94 KIETGHEDTVHDVAMDYYGKRLATASSDYSIKIIGVGNNTSQHLAKLSG-HKGAVWEVAWAHPKFGSILASCSFDGTVIIWKEGNSNEWIKDHVFEDHKSSVNSIDWAPHELGLCLACGSSDGNISVFTARADGGWDTSRIDQAHPVGVTSVSWAPSTAPGALVGSGFLDPVQKLCSGGCDNTVKVWK 654
            K+ +GH   +  VA+      +ATAS D S+++      T + +  + G H  +V  VAW  P    +LA  SFD TV I+ E   ++W      E H++ V  + W+ H+ G+ LA  S D ++ ++ A  D  +D   + Q H   V  V+W P                  L SG  DNT++ W+
Sbjct:  287 KVLSGHRGRIWSVAVHPTLPLVATASEDKSVRVFQA--QTGELIHVIDGYHTRSVRRVAW-RPIDRPVLAIASFDATVSIY-EKIDDDWECVAALEGHENEVKCVAWS-HD-GVYLATCSRDKSVWIWEAMEDDEFDCLAVLQEHTQDVKVVAWHPKD--------------DLLVSGSYDNTIRFWR 454          
The following BLAST results are available for this feature:
BLAST of FC932275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CIAO1_BOVIN8.813e-1228.96Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROVI2.564e-1129.79Probable cytosolic iron-sulfur protein assembly pr... [more]
HETE1_PODAN4.374e-1131.55Vegetative incompatibility protein HET-E-1 OS=Podo... [more]
CIAO1_DROMO5.713e-1129.26Probable cytosolic iron-sulfur protein assembly pr... [more]
CIAO1_DROGR7.461e-1129.47Probable cytosolic iron-sulfur protein assembly pr... [more]
CFD1_SCHJY7.461e-1129.26Probable cytosolic Fe-S cluster assembly factor SJ... [more]

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Properties
Property NameValue
Genbank descriptionC34206G07EF PostHarveN Citrus clementina cDNA clone C34206G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932275 ID=FC932275; Name=FC932275; organism=Citrus clementina; type=EST; length=657bp
TCTGGAGATTGCGAACGCTGTCGTTTCGTCCCTTCCGATCTTCATCCTCA
CAAGGGACCCTTGGTGTAAGCACTAGAGAAAATGCCACCTCAAAAGATTG
AAACTGGTCATGAGGACACAGTACATGATGTGGCGATGGATTACTATGGC
AAGCGCCTCGCCACGGCATCTTCGGATTACTCAATTAAGATCATTGGTGT
GGGCAATAACACCTCTCAGCATCTCGCAAAGCTTAGTGGTCATAAAGGTG
CTGTTTGGGAGGTGGCTTGGGCTCACCCAAAATTTGGGTCTATACTTGCA
TCCTGTTCTTTTGACGGGACTGTCATAATATGGAAGGAGGGTAACAGTAA
TGAGTGGATCAAAGATCATGTTTTTGAGGACCACAAATCGTCAGTCAATT
CGATTGATTGGGCGCCTCATGAGCTCGGTCTATGTTTGGCTTGTGGTTCG
TCAGATGGGAACATATCAGTTTTTACGGCTAGAGCTGATGGCGGCTGGGA
TACATCTAGGATTGACCAAGCTCATCCGGTTGGTGTGACTTCAGTTTCAT
GGGCCCCATCAACAGCTCCCGGTGCACTTGTGGGTTCTGGTTTTCTTGAC
CCAGTTCAGAAGCTTTGTTCAGGTGGTTGTGATAATACCGTGAAGGTGTG
GAAAGCT
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