FC932276

Overview
NameFC932276
Unique NameFC932276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_XENTR (Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.890e-27
Identity = 65/208 (31.25%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            I P+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA +  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++  P    E+ +V   +    ++APVSG    + DG L I AAGD  V +  +  F  +GK + F+GE G      +   +V G+ +  ++EG+  A   G   +  +D
Sbjct:  244 IIPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITFACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDQGVYEDCSSCFLAMGKTSFFLGEVGNAARMMLILNMVQGSFMATIAEGMTLAQVTGQSQQTLLD 451          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_PONAB (Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 65/208 (31.25%), Postives = 112/208 (53.85%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ P   YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  263 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLD 470          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_MOUSE (Putative oxidoreductase GLYR1 OS=Mus musculus GN=Glyr1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27
Identity = 66/208 (31.73%), Postives = 113/208 (54.33%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRKWMD 699
            ITP+  +IG++G+G+MG+ + S LL  G++VTV+ RT+ K      +GA L  +P +V  +  + F+ V  P+  + + L P G++ G+ PG  YVD ++       E+ +V   +    ++APVSG    + DG L I AAGD  + +  +  F+ +GK + F+GE G      +   +V G+ +  ++EGL  A   G   +  +D
Sbjct:  262 ITPTDKKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEK------EGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLD 463          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: 3HIDH_DICDI (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.446e-26
Identity = 63/204 (30.88%), Postives = 108/204 (52.94%), Query Frame = 1
Query:   82 TPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKP-TFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVRK 690
            T S   +G+IG+G MG   A  L+  G+++ V+  +     +L+ +GA +A SP +VAK + V+ +M+     V+++    +GI   + PG + +D+++  PA ARE+  +A++     +D PVSGG  GA  G L     G            E +GK     G+ G GQ  K+ N +V+G +++ +SE +    K G+D +K
Sbjct:   19 TSSSKTVGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQDFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKK 222          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_AEDAE (Putative oxidoreductase GLYR1 homolog OS=Aedes aegypti GN=AAEL006684 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.071e-25
Identity = 66/201 (32.84%), Postives = 107/201 (53.23%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGL 678
            I  S  + G++G+G+MG  M   LL++G+SV V+ RT++K  + Q  GA +A +P DV + + V FS V  PQ  + +     G++S    G  YV+ T   P  + +I +    K    ++A + G    A +G L I AAG+  + +     FE + + +F MG+ G      +  Q++ G  L G++EGL  AD+AGL
Sbjct:  269 IQASNLKFGFLGLGIMGCGMVKNLLNSGHSVVVWNRTATKCRKFQEAGAEVADTPSDVIEMTDVTFSCVADPQVAKELVFGNCGVMSANLVGKGYVEMTGVDPETSHDIAEQIIAKGGRYLEAQIQGSKNQAEEGTLIILAAGERLLFEECQTCFEAISRNSFYMGDVGNATKMNLVLQMISGVMLAGIAEGLALADRAGL 469          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: MMSB_PSEAE (3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa GN=mmsB PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 69/197 (35.03%), Postives = 102/197 (51.78%), Query Frame = 1
Query:   94 TRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            T I ++G+G MG  MA+ LL AG+ V V+       L L  QGA  A S     + + VV SM+   Q V S+ L  DG+++ +    + +D ++  P  AR++ + A  K    +DAPVSGG  GAR G L+    G +       P+ E +G+  F  G+ G GQ  KI N +++G  + G +E L    K GLD
Sbjct:    2 TDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEGFARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLD 198          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: GLYR1_ANOGA (Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae GN=AGAP009949 PE=3 SV=5)

HSP 1 Score: 107.071 bits (266), Expect = 9.619e-23
Identity = 60/201 (29.85%), Postives = 105/201 (52.24%), Query Frame = 1
Query:   79 ITPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGL 678
            I  S+ + G++G+GVMG  +   L+ +G+SV V+ R++ K  + Q  GA +A +P DV + + V +S V  PQ  + +     G++S    G  YV+ T   P  + +I +    K    ++A + G    A +G L I A+GD  + +     FE + + +F +G+ G      +  Q++ G  L G++E +  AD+AGL
Sbjct:  276 IKASQLKFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTYSCVSDPQVAKDMVFGNCGVMSANLAGKGYVEMTGVDPETSNDINEAIISKGGRYLEAQIQGSKNQAEEGTLIILASGDRLLFEECQSCFEAISRNSFYLGDVGNATKMNLILQMISGITLAGVAEAMALADRAGL 476          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: 3HIDH_MOUSE (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.641e-22
Identity = 58/199 (29.15%), Postives = 105/199 (52.76%), Query Frame = 1
Query:   88 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + +  G  +A+SP +VA+ +  + +M+ +  +   +    +GI+  +  G++ +D+++  P++++E+ K   +     +DAPVSGG   AR G L     G          L E +G    + G  G GQS KI N +++  +++G +E +    ++GLD
Sbjct:   37 SKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLD 235          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: 3HIDH_RAT (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 58/199 (29.15%), Postives = 104/199 (52.26%), Query Frame = 1
Query:   88 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPT-FMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + +  G  +A+SP DVA+ +  + +M+ +  +   +    +GI+  +  G++ +D+++  P++++E+ K   +     +DAPVSGG   AR G L     G          L   +G    + G  G GQS KI N +++  +++G +E +    ++GLD
Sbjct:   37 SKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENEFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLD 235          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: 3HIDH_PONAB (3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.235e-22
Identity = 59/199 (29.65%), Postives = 101/199 (50.75%), Query Frame = 1
Query:   88 SKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLG-KPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLD 681
            SKT +G+IG+G MGN MA  L+  GY + +Y        + Q  G  + +SP DVA+ +  + +M+ T  +        +GI+  +  G++ +D+++  PA+++E+ K   +     +DAPVSGG   AR G L     G          L   +G    + G  G GQ+ KI N +++  +++G +E +    + GLD
Sbjct:   38 SKTPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLD 236          
The following BLAST results are available for this feature:
BLAST of FC932276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLYR1_XENTR2.890e-2731.25Putative oxidoreductase GLYR1 OS=Xenopus tropicali... [more]
GLYR1_PONAB8.407e-2731.25Putative oxidoreductase GLYR1 OS=Pongo abelii GN=G... [more]
GLYR1_MOUSE8.407e-2731.73Putative oxidoreductase GLYR1 OS=Mus musculus GN=G... [more]
3HIDH_DICDI2.446e-2630.88Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
GLYR1_AEDAE2.071e-2532.84Putative oxidoreductase GLYR1 homolog OS=Aedes aeg... [more]
MMSB_PSEAE8.700e-2435.033-hydroxyisobutyrate dehydrogenase OS=Pseudomonas ... [more]
GLYR1_ANOGA9.619e-2329.85Putative oxidoreductase GLYR1 homolog OS=Anopheles... [more]
3HIDH_MOUSE1.641e-2229.153-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_RAT6.235e-2229.153-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]
3HIDH_PONAB6.235e-2229.653-hydroxyisobutyrate dehydrogenase, mitochondrial ... [more]

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Properties
Property NameValue
Genbank descriptionC34206G08EF PostHarveN Citrus clementina cDNA clone C34206G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932276 ID=FC932276; Name=FC932276; organism=Citrus clementina; type=EST; length=700bp
GATTTTTTCACTCCCCAAAGTCCATCTTCTCTCTCACTCATCAACTCTGC
AAATATGGAAACTCCTTATCCAAAGCCCATTACTCCCAGCAAGACCCGCA
TCGGCTGGATCGGGATCGGCGTAATGGGCAACGCCATGGCTTCCCGCCTT
CTCTCCGCCGGCTACTCCGTCACCGTCTACGCTCGCACCTCATCAAAAGC
CCTTCAGCTCCAATCACAAGGCGCCACTCTCGCCGCTTCACCGTTCGACG
TCGCCAAATCAAGCGGCGTTGTCTTCTCCATGGTGGGCACCCCACAAGAC
GTTCGATCAATTGCCCTCGATCCCGACGGCATCGTTTCTGGCCTCAACCC
CGGCGCCGTCTACGTTGACACCACGAGCAGTCACCCTGCCCTCGCGCGGG
AAATATTCAAAGTCGCAAGAGAGAAAGATTGCTGGGCTGTTGACGCACCC
GTATCCGGAGGCGACATTGGCGCCCGAGATGGGAAATTAGCTATATTTGC
TGCTGGTGATAGTGCTGTTGTGCAGTGGCTGACTCCGTTGTTTGAGGTTC
TGGGGAAGCCTACGTTTATGGGCGAGGCGGGTTGTGGGCAAAGCTGTAAA
ATTGCGAATCAGATTGTGGTGGGAGCAAACTTGTTGGGACTGAGTGAAGG
TTTGGTGTTTGCTGATAAAGCGGGGTTGGATGTGAGAAAATGGATGGATG
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