FC932276

Overview
NameFC932276
Unique NameFC932276
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15416 contig Ccv1_Contig15416:28..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: 3HIDH_CAEEL (Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.589e-17
Identity = 52/197 (26.40%), Postives = 102/197 (51.78%), Query Frame = 1
Query:  103 GWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLA-IFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDVR 687
            G+IG+G MG  MA  L+  G  + VY    +   + +++G  +AA P D+A +S  + +++ +   V+++     GI   + PG + +D+++    ++ E+ + A       +DAP+SGG  GA+   L  +  AG+ A  +    +  ++GK    +G  G G + KI N +++G  ++ ++E +      GLD +
Sbjct:    5 GFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDATFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAK 201          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: YIHU_SHIFL (Uncharacterized oxidoreductase yihU OS=Shigella flexneri GN=yihU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  100 IGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIAN 609
            I +IG+G MG+ MAS LL  G+ + V+   +     L  +GAT AA+P   AK +  + +M+     VR++    +G+  GL+  A+ +D ++ HP    ++    + K    +D PV      A  G L + A G +  V+  TP+   +G      G  G G   K+ N
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLIN 174          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: YIHU_ECOLI (Uncharacterized oxidoreductase yihU OS=Escherichia coli (strain K12) GN=yihU PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.537e-15
Identity = 50/171 (29.24%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  100 IGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIAN 609
            I +IG+G MG+ MAS LL  G+ + V+   +     L  +GAT AA+P   AK +  + +M+     VR++    +G+  GL+  A+ +D ++ HP    ++    + K    +D PV      A  G L + A G +  V+  TP+   +G      G  G G   K+ N
Sbjct:    4 IAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELINAGGPGMGIRVKLIN 174          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: YGBJ_ECOLI (Uncharacterized oxidoreductase ygbJ OS=Escherichia coli (strain K12) GN=ygbJ PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.645e-14
Identity = 56/202 (27.72%), Postives = 97/202 (48.02%), Query Frame = 1
Query:   82 TPSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGAT-LAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFE-VLGKPTFMG-EAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGL 678
            T S+  +G +G+G MG   A   + AG S       S+    L+  GA  ++ +    A+    +  +V     V+ +     G+   L PG   + +++   A A+EI       D   +DAPVSGG + A +G++ + A+G     + L P+ E V GK   +G E G G + KI +Q++ G ++   +E +  A +AG+
Sbjct:    3 TGSEFHVGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAVAGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGI 204          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: Y770_MYCTU (Uncharacterized oxidoreductase Rv0770/MT0794 OS=Mycobacterium tuberculosis GN=Rv0770 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.392e-13
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 1
Query:   85 PSKTRIGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWL-TPLFEVLGKPTFMGEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGLDV 684
            P   R+G+IG+G  G  MA RLL     +TV+             GAT AAS  DVA++  +  ++    Q V S+    +G+ +   PG +    ++     A ++ +  + +    VDAPVSGG   A  G+LA+    D    Q +  P           GE G G   K+A  ++   +    +E    A+  GLD+
Sbjct:    5 PETPRLGYIGLGNQGAPMAKRLLDWPGGLTVFDVRVEAMAPFVEGGATAAASVSDVAEADIISITVFDDAQ-VSSVITADNGLATHAKPGTIVAIHSTIADTTAVDLAEKLKPQGIHIVDAPVSGGAAAAAKGELAVMVGADDEAFQRIKEPFSRWASLLIHAGEPGAGTRMKLARNMLTFVSYAAAAEAQRLAEACGLDL 204          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: YIHU_SALTY (Uncharacterized oxidoreductase yihU OS=Salmonella typhimurium GN=yihU PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.179e-12
Identity = 53/195 (27.18%), Postives = 87/195 (44.62%), Query Frame = 1
Query:  100 IGWIGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGATLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTF-MGEAGCGQSCKIANQIV-VGANLLGLSEGLVFADKAGL 678
            I +IG+G MG+ MAS LL  G+ ++V+        +L  +GA  A+SP      +  V +M+     VRS+     G+   L+  A+ +D ++ HP     +    + K    +D P+      A  G L + A G +  V+  TP+   +G      G  G G   K+ N  + +  N L  +E  V  +  GL
Sbjct:    4 IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNELVNTGGPGMGIRVKLINNYMSIALNALS-AEAAVLCEALGL 197          
BLAST of FC932276 vs. ExPASy Swiss-Prot
Match: Y1010_HAEIN (Uncharacterized oxidoreductase HI1010 OS=Haemophilus influenzae GN=HI1010 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 1
Query:  109 IGIGVMGNAMASRLLSAGYSVTVYARTSSKALQLQSQGA-TLAASPFDVAKSSGVVFSMVGTPQDVRSIALDPDGIVSGLNPGAVYVDTTSSHPALAREIFKVAREKDCWAVDAPVSGGDIGARDGKLAIFAAGDSAVVQWLTPLFEVLGKPTFM--GEAGCGQSCKIANQIVVGANLLGLSEGLVFADKAGL 678
            IG+G MG   A   ++AG +            +L++ GA  +AA+ +D A     V  +V       ++    +GI   L  G   + +++     A+ I +   E     +DAPVSGG   A  G++ + A+G     + L P+ +      +    E G G + KI +Q++ G ++   +E +  A KAG+
Sbjct:   11 IGLGSMGMGAAVSCINAGLTTYGIDLNPVALEKLKAAGAKAVAANGYDFAHELDAVVILVVNAAQANAVLFGENGIAKKLKAGTAVMVSSTMAAQDAQIISQKLTELGLIMLDAPVSGGAAKALKGEMTVMASGSKQAFELLQPVLDATAAKVYNIGEEIGLGATVKIVHQLLAGVHIAAGAEAMALASKAGI 203          
The following BLAST results are available for this feature:
BLAST of FC932276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
3HIDH_CAEEL1.589e-1726.40Probable 3-hydroxyisobutyrate dehydrogenase, mitoc... [more]
YIHU_SHIFL2.537e-1529.24Uncharacterized oxidoreductase yihU OS=Shigella fl... [more]
YIHU_ECOLI2.537e-1529.24Uncharacterized oxidoreductase yihU OS=Escherichia... [more]
YGBJ_ECOLI1.645e-1427.72Uncharacterized oxidoreductase ygbJ OS=Escherichia... [more]
Y770_MYCTU1.392e-1327.86Uncharacterized oxidoreductase Rv0770/MT0794 OS=My... [more]
YIHU_SALTY1.179e-1227.18Uncharacterized oxidoreductase yihU OS=Salmonella ... [more]
Y1010_HAEIN4.952e-1125.39Uncharacterized oxidoreductase HI1010 OS=Haemophil... [more]

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Properties
Property NameValue
Genbank descriptionC34206G08EF PostHarveN Citrus clementina cDNA clone C34206G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932276 ID=FC932276; Name=FC932276; organism=Citrus clementina; type=EST; length=700bp
GATTTTTTCACTCCCCAAAGTCCATCTTCTCTCTCACTCATCAACTCTGC
AAATATGGAAACTCCTTATCCAAAGCCCATTACTCCCAGCAAGACCCGCA
TCGGCTGGATCGGGATCGGCGTAATGGGCAACGCCATGGCTTCCCGCCTT
CTCTCCGCCGGCTACTCCGTCACCGTCTACGCTCGCACCTCATCAAAAGC
CCTTCAGCTCCAATCACAAGGCGCCACTCTCGCCGCTTCACCGTTCGACG
TCGCCAAATCAAGCGGCGTTGTCTTCTCCATGGTGGGCACCCCACAAGAC
GTTCGATCAATTGCCCTCGATCCCGACGGCATCGTTTCTGGCCTCAACCC
CGGCGCCGTCTACGTTGACACCACGAGCAGTCACCCTGCCCTCGCGCGGG
AAATATTCAAAGTCGCAAGAGAGAAAGATTGCTGGGCTGTTGACGCACCC
GTATCCGGAGGCGACATTGGCGCCCGAGATGGGAAATTAGCTATATTTGC
TGCTGGTGATAGTGCTGTTGTGCAGTGGCTGACTCCGTTGTTTGAGGTTC
TGGGGAAGCCTACGTTTATGGGCGAGGCGGGTTGTGGGCAAAGCTGTAAA
ATTGCGAATCAGATTGTGGTGGGAGCAAACTTGTTGGGACTGAGTGAAGG
TTTGGTGTTTGCTGATAAAGCGGGGTTGGATGTGAGAAAATGGATGGATG
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