FC932279

Overview
NameFC932279
Unique NameFC932279
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_LEPIN (ATP-dependent Clp protease proteolytic subunit OS=Leptospira interrogans GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  278 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCL 93          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_CAMHC (ATP-dependent Clp protease proteolytic subunit OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=clpP PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 35/83 (42.17%), Postives = 48/83 (57.83%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV L       V   ++A+ L+L+ ED +K IYLYINS G        G  T  F+IYD M Y+KP + T+C+
Sbjct:   18 DIYSRLLKDRIVMLSGEINDEVASSVVAQLLFLEAEDPDKDIYLYINSPG--------GVVTSGFSIYDTMNYIKPAVSTICI 92          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP1_LEPIC (ATP-dependent Clp protease proteolytic subunit 1 OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpP1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.937e-11
Identity = 38/99 (38.38%), Postives = 57/99 (57.58%), Query Frame = 2
Query:  278 VIPFT-SGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            VIP+    T+  +   D+ S L K+RI++LG +       +I A+ L+L+ E+ E+ IYLY+NS G        GY +   AIYD M Y+KP + TLC+
Sbjct:    3 VIPYVIEQTSRGERSYDIFSRLLKDRIIFLGNAINDDYANVITAQLLFLEAENPERDIYLYLNSPG--------GYVSSGLAIYDTMQYIKPDVRTLCL 93          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_THESQ (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga sp. (strain RQ2) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_THEP1 (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_THEMA (ATP-dependent Clp protease proteolytic subunit OS=Thermotoga maritima GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV+LG      V  L++A+ L+L+ ED +K +YLYINS G        G  T   AIYD M Y+K  + T+CV
Sbjct:   28 DIFSRLLKDRIVFLGSPIDDYVANLVIAQLLFLEAEDPDKDVYLYINSPG--------GSVTAGLAIYDTMQYIKCDVSTICV 102          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_HALOH (ATP-dependent Clp protease proteolytic subunit OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 35/83 (42.17%), Postives = 52/83 (62.65%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV+LG      ++ LI+A+ L+L+ ED +K I+LYINS G        G  T A A+YD + Y+KP + T+C+
Sbjct:   19 DIYSRLLKDRIVFLGHPINDELSNLIIAQLLFLEAEDPDKDIHLYINSPG--------GSVTAALAMYDTIQYIKPDVATICM 93          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP_ANADF (ATP-dependent Clp protease proteolytic subunit OS=Anaeromyxobacter sp. (strain Fw109-5) GN=clpP PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 36/83 (43.37%), Postives = 49/83 (59.04%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            D+ S L K+RIV+LG      V  +++A+ L+L+ ED +K I LYINS G        G  T   AIYD M YVKP + T+C+
Sbjct:   21 DIYSRLLKDRIVFLGTPIDDDVANVVIAQLLFLESEDPDKDISLYINSPG--------GSVTSGLAIYDTMQYVKPQVSTICL 95          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP2_PROMA (ATP-dependent Clp protease proteolytic subunit 2 OS=Prochlorococcus marinus GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 2
Query:  263 PVITMVIPFTSGTAWEQPPPDLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLCV 571
            P+ T  +P+    +  +   D+ + L   RI++LG      V   ++A+ LYL  ED+ KPIYLYINS G        G  T   AIYD M YVK  + T+CV
Sbjct:    2 PIGTPSVPYRLPGSQFERWVDIYTRLGAERILFLGQEVTDGVANSLVAQMLYLDSEDSTKPIYLYINSPG--------GSVTAGLAIYDTMKYVKSDVVTICV 96          
BLAST of FC932279 vs. ExPASy Swiss-Prot
Match: CLPP2_BACHD (ATP-dependent Clp protease proteolytic subunit 2 OS=Bacillus halodurans GN=clpP2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.141e-11
Identity = 36/82 (43.90%), Postives = 50/82 (60.98%), Query Frame = 2
Query:  323 DLASYLYKNRIVYLGMSFVPSVTELILAEFLYLQYEDAEKPIYLYINSTGTTKGGEKLGYETEAFAIYDVMGYVKPPIFTLC 568
            D+ S L K+RIV+LG +    +   I+A+ L+L+ E+ +K IYLYINS G        G  +  FAIYD M +VKP I T+C
Sbjct:   20 DIYSRLLKDRIVFLGAAIDDQIANSIVAQLLFLEAENPKKDIYLYINSPG--------GSTSAGFAIYDTMQFVKPSIHTIC 93          
The following BLAST results are available for this feature:
BLAST of FC932279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
CLPP_LEPIN3.937e-1138.38ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CAMHC3.937e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP1_LEPIC3.937e-1138.38ATP-dependent Clp protease proteolytic subunit 1 O... [more]
CLPP_THESQ5.141e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEP15.141e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_THEMA5.141e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_HALOH5.141e-1142.17ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_ANADF5.141e-1143.37ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP2_PROMA5.141e-1137.86ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP2_BACHD5.141e-1143.90ATP-dependent Clp protease proteolytic subunit 2 O... [more]

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Properties
Property NameValue
Genbank descriptionC34206H03EF PostHarveN Citrus clementina cDNA clone C34206H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932279 ID=FC932279; Name=FC932279; organism=Citrus clementina; type=EST; length=622bp
GAGCCTTTTCACTCTTGCTCTCTAACAACTCCGCTACCAAATGGAAGTCG
CCACCGCATCAGCGCCGATCTTCGGGCTCCGCACGCGCATGTTAGCAACA
CCACCACGCACCTCTCCACGAACCGTAAATTGTAACCGAAACCTATCCAC
CAGCTTCATCTCTCCATTCGCAAACGGCAGCGTTTCCTCCGACTTCTCCG
GGCTCAGGCTCCGACCCGATTGCCTCAATCCGGATTCATTCTGCAAGTCC
AAGCCTAGGAGCCCCGTCATCACCATGGTCATTCCTTTTACTAGTGGAAC
TGCATGGGAGCAACCTCCACCAGACTTGGCATCTTATTTGTACAAGAATC
GAATTGTTTACTTGGGCATGTCTTTTGTTCCTTCTGTCACAGAGCTGATT
CTTGCTGAGTTCCTTTACCTGCAGTATGAAGATGCTGAGAAGCCCATTTA
CTTATACATAAACTCTACGGGAACAACCAAGGGTGGCGAGAAGTTGGGTT
ATGAAACTGAGGCTTTTGCGATATATGATGTTATGGGTTATGTCAAGCCG
CCTATATTTACTCTTTGTGTCGGCAATGCTTGGGGTGAGGCAGCGCTTCT
CTTGGGTGCCGGTGCCAAAGGA
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