FC932282

Overview
NameFC932282
Unique NameFC932282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTX6_SOYBN (Probable glutathione S-transferase OS=Glycine max GN=HSP26-A PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 91/216 (42.13%), Postives = 129/216 (59.72%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKT-WTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNV--EAECPKFIAWVKRCLQRETVAQALPDGKEVLEFVSAMKTNL 706
            +V LL    S F  RV+IAL  KGV+Y++ EE+L NKS LLL+ NPVHKK+PV  HN +P  ES +IV+YIDE WK+  P+LPSDPYQRA ARFW  FID K+  ++ K+ +T   +E+E  ++E +E L+ LE +L DK FFGG+ FG VD++ +    W   ++      +    + P    W +  L    V + LP    +  +  A   +L
Sbjct:    7 DVKLLGIVGSPFVCRVQIALKLKGVEYKFLEENLGNKSDLLLKYNPVHKKVPVFVHNEQPIAESLVIVEYIDETWKNN-PILPSDPYQRALARFWSKFIDDKIVGAVSKSVFTVDEKEREKNVEETYEALQFLENELKDKKFFGGEEFGLVDIAAVFIAFWIPIFQEIAGLQLFTSEKFPILYKWSQEFLNHPFVHEVLPPRDPLFAYFKARYESL 221          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTU6_ORYSJ (Probable glutathione S-transferase GSTU6 OS=Oryza sativa subsp. japonica GN=GSTU6 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 95/224 (42.41%), Postives = 128/224 (57.14%), Query Frame = 2
Query:   62 ANEVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKA----PLLPSDPYQRAQARFWVDFIDKKMYDSLRKTW------TTKGEEQEAAMKEFFEVLKTLEGQLGD----KPFFGGDNFGYVDLSLIPFYCWFYTYE-TCGKFNVE-AECPKFIAWVKRCLQRETVAQALP-DGKEVLEF 682
            + E+ LL  W S + IRVR+ L  K + YEY EE+L +KS LLL  NPVHK +PVL H GRP  ES +IVQYIDEVW   A     ++PSDPY+RA ARFW  ++D    D +R  W      +   EE+ AA+ +    L+TLEG  G+    KPFFGGD  G+VD+ L  +  WF   +   G+  ++ A  P   AW +R    +     +P D  ++LEF
Sbjct:    4 SGELKLLGVWSSPYAIRVRVVLNLKSLPYEYVEENLGDKSDLLLASNPVHKSVPVLLHAGRPVNESQVIVQYIDEVWPGGAGGRPSVMPSDPYERAVARFWAAYVD----DKVRPAWLAILFGSKTEEERAAAVAQAVAALETLEGAFGECSKGKPFFGGDGVGFVDVVLGGYLGWFTAIDKLIGRRLIDPARTPALAAWEERFRATDAAKGVVPDDADKLLEF 223          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTX1_SOLTU (Probable glutathione S-transferase OS=Solanum tuberosum GN=PRP1 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.144e-37
Identity = 81/152 (53.29%), Postives = 107/152 (70.39%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDL 523
            EV LL    S F  RV  AL  KGVKYE+ EEDL+NKSPLLLQ NP+HKKIPVL HNG+  CES +I++YIDE ++  + +LP DPY RA ARFW  +++ K   ++ K++ +KGEEQE A +E +E+LK L+ +  DK  F GD FG+ D+
Sbjct:    3 EVKLLGLRYSPFSHRVEWALKIKGVKYEFIEEDLQNKSPLLLQSNPIHKKIPVLIHNGKCICESMVILEYIDEAFEGPS-ILPKDPYDRALARFWAKYVEDK-GAAVWKSFFSKGEEQEKAKEEAYEMLKILDNEFKDKKCFVGDKFGFADI 152          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTXA_ARATH (Glutathione S-transferase 103-1A OS=Arabidopsis thaliana GN=103-1A PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.929e-36
Identity = 87/214 (40.65%), Postives = 129/214 (60.28%), Query Frame = 2
Query:   68 EVVLLDFWPSMFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEE-QEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDL---SLIPFYCWFYTYETCG-KFNVEAECPKFIAWVKRCLQRETVAQALPDGKEVLEFVSAM 694
            EV LL  W S F  RV +AL  KG+ YEY EE L+NKSPLLL +NP+HKK+PVL HNG+   ES +I++YIDE W    P+LP DPY+R++ARF+   +D+++ +    +     E+ +E   ++  E++  LE +L  K +FGG   G++D    SLIPF C    +E  G +   E + P+F  WV+   + E V   +P  +E +E ++ M
Sbjct:    6 EVKLLGIWASPFSRRVEMALKLKGIPYEYVEEILENKSPLLLALNPIHKKVPVLVHNGKTILESHVILEYIDETWPQN-PILPQDPYERSKARFFAKLVDEQIMNVGFISMARADEKGREVLAEQVRELIMYLEKELVGKDYFGGKTVGFLDFVAGSLIPF-CLERGWEGIGLEVITEEKFPEFKRWVRNLEKVEIVKDCVPPREEHVEHMNYM 217          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTX2_MAIZE (Probable glutathione S-transferase BZ2 OS=Zea mays GN=BZ2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 78/217 (35.94%), Postives = 108/217 (49.77%), Query Frame = 2
Query:   95 SMFGIRVRIALAEKGVKYEYKEEDL-KNKSPLLLQMNPVHKKIPVLN-HNGRPFCESPIIVQYIDEVWKDKAP------LLPSDPYQRAQARFWVDFIDKKMYDSLR--KTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKP-----FFGGDNF-GYVDLSLIPFYCWFYTYETCGKFN----VEAEC-PKFIAWVKRCLQRETVAQALPDGKEVLEF 682
            S F  R R+AL  +GV YE  +E L   KS  LL  NPV+ KIPVL   +GR  CES +IVQYI++V ++         LLP DPY+RA  RFW  FID K + +L       T G   +AA ++    L  LE    D+      F GGD   G +DL+L    C+      C + +    ++A   P    W +R        + LPD ++V++F
Sbjct:    9 SPFTARARLALDLRGVAYELLDEPLGPKKSDRLLAANPVYGKIPVLLLPDGRAICESAVIVQYIEDVARESGGAEAGSLLLPDDPYERAMHRFWTAFIDDKFWPALDAVSLAPTPGARAQAA-EDTRAALSLLEEAFKDRSNGRAFFSGGDAAPGLLDLAL---GCFLPALRACERLHGLSLIDASATPLLDGWSQRFAAHPAAKRVLPDTEKVVQF 221          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: SSPA_SHIFL (Stringent starvation protein A OS=Shigella flexneri GN=sspA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   98 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 535
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L        ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +         E +AA K+  E L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERFPHP-PLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: SSPA_ECOLI (Stringent starvation protein A OS=Escherichia coli (strain K12) GN=sspA PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   98 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 535
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L        ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +         E +AA K+  E L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERFPHP-PLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: SSPA_ECOL6 (Stringent starvation protein A OS=Escherichia coli O6 GN=sspA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   98 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 535
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L        ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +         E +AA K+  E L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERFPHP-PLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: SSPA_ECO57 (Stringent starvation protein A OS=Escherichia coli O157:H7 GN=sspA PE=3 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 48/146 (32.88%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   98 MFGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVLNHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMKEFFEVLKTLEGQLGDKPFFGGDNFGYVDLSLIP 535
            ++  +VRI LAEKGV +E +  +  N    L+ +NP ++ +P L        ES II++Y+DE +    PL+P  P  R ++R ++  I+K  Y  +         E +AA K+  E L  +    G KP+F  D F  VD  L P
Sbjct:   20 IYSHQVRIVLAEKGVSFEIEHVEKDNPPQDLIDLNP-NQSVPTLVDRELTLWESRIIMEYLDERFPHP-PLMPVYPVARGESRLYMHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCYLAP 163          
BLAST of FC932282 vs. ExPASy Swiss-Prot
Match: GSTO1_HUMAN (Glutathione S-transferase omega-1 OS=Homo sapiens GN=GSTO1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 60/205 (29.27%), Postives = 93/205 (45.37%), Query Frame = 2
Query:  101 FGIRVRIALAEKGVKYEYKEEDLKNKSPLLLQMNPVHKKIPVL-NHNGRPFCESPIIVQYIDEVWKDKAPLLPSDPYQRAQARFWVDFIDKKMYDSLRKTWTTKGEEQEAAMK-EFFEVLKTLEGQLGDK--PFFGGDNFGYVDLSLIPFYCWFYTYETCGKFNVEAECPKFIAWVKRCLQRETVAQALPDGKEVLEFVSAMKTN 703
            F  R R+ L  KG+++E    +LKNK     + NP    +PVL N  G+   ES I  +Y+DE +  K  LLP DPY++A  +  ++    K+   +     ++ +E  A +K EF +    LE  L +K   FFGG++   +D  + P   WF   E           PK   W+    +  TV+  L   K+   F+     N
Sbjct:   34 FAERTRLVLKAKGIRHEVININLKNKPEWFFKKNPFGL-VPVLENSQGQLIYESAITCEYLDEAYPGK-KLLPDDPYEKACQKMILELF-SKVPSLVGSFIRSQNKEDYAGLKEEFRKEFTKLEEVLTNKKTTFFGGNSISMIDYLIWP---WFERLEAMKLNECVDHTPKLKLWMAAMKEDPTVSALLTSEKDWQGFLELYLQN 232          
The following BLAST results are available for this feature:
BLAST of FC932282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GSTX6_SOYBN6.768e-4042.13Probable glutathione S-transferase OS=Glycine max ... [more]
GSTU6_ORYSJ2.844e-3842.41Probable glutathione S-transferase GSTU6 OS=Oryza ... [more]
GSTX1_SOLTU3.144e-3753.29Probable glutathione S-transferase OS=Solanum tube... [more]
GSTXA_ARATH5.929e-3640.65Glutathione S-transferase 103-1A OS=Arabidopsis th... [more]
GSTX2_MAIZE1.327e-1935.94Probable glutathione S-transferase BZ2 OS=Zea mays... [more]
SSPA_SHIFL3.740e-1432.88Stringent starvation protein A OS=Shigella flexner... [more]
SSPA_ECOLI3.740e-1432.88Stringent starvation protein A OS=Escherichia coli... [more]
SSPA_ECOL63.740e-1432.88Stringent starvation protein A OS=Escherichia coli... [more]
SSPA_ECO573.740e-1432.88Stringent starvation protein A OS=Escherichia coli... [more]
GSTO1_HUMAN5.970e-1229.27Glutathione S-transferase omega-1 OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34206H06EF PostHarveN Citrus clementina cDNA clone C34206H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932282 ID=FC932282; Name=FC932282; organism=Citrus clementina; type=EST; length=713bp
GGTGTTTGTCTTGTCTTTTCATTTATTCACTCTTGACTCTTAGTAAGCTT
CTGTCACAATGGCGAACGAAGTGGTTCTGTTGGATTTCTGGCCCAGCATG
TTTGGGATAAGGGTCAGGATTGCTCTGGCGGAGAAAGGCGTCAAGTATGA
GTACAAGGAAGAGGACTTGAAGAACAAGAGCCCCCTGCTTCTGCAGATGA
ACCCCGTTCACAAGAAGATCCCGGTTCTCAACCACAACGGCAGACCGTTC
TGTGAGTCACCCATCATTGTTCAGTACATTGACGAAGTGTGGAAGGACAA
GGCTCCATTGCTTCCCTCTGATCCCTACCAGAGAGCTCAAGCTAGGTTCT
GGGTAGATTTCATTGACAAGAAGATGTACGATTCTTTGAGGAAGACATGG
ACCACAAAGGGAGAAGAGCAGGAGGCAGCTATGAAGGAGTTCTTTGAAGT
TCTGAAGACTTTGGAAGGGCAGCTTGGAGACAAGCCTTTCTTCGGAGGAG
ACAATTTTGGGTATGTGGATTTAAGTTTGATCCCATTCTATTGTTGGTTT
TACACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTGAGTGCCCCAA
GTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACTGTTGCCCAGG
CACTTCCTGATGGGAAAGAAGTGCTTGAATTTGTTTCAGCGATGAAGACA
AATTTAGGATTGG
back to top