FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_DEBHA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Debaryomyces hansenii GN=ATM1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 6.181e-17
Identity = 43/101 (42.57%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            PIL+  +  IP G  + I+GPSGSGKST+LR + R ++  SG +F+DG+DI+ + V SLRR +G++ Q   LF  T+ +NIRYG        T+ E+++++
Sbjct:  452 PILQNASFTIPAGEKIAIVGPSGSGKSTILRLIFRFYDVESGKIFIDGQDISKVTVESLRRSIGIVPQDTPLFNDTILENIRYG----RLDATDKEIHEMI 548          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PHNC_ALCFA (Phosphonates import ATP-binding protein phnC OS=Alcaligenes faecalis GN=phnC PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 46/100 (46.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:  142 VGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSLRRKVGMLFQIPALFEG-TVADNIRYG 429
            +  L+K    G   LKGVN+ +  G ++G+IGPSG+GKSTL+R +NRL EP  G V L+G+D+ +L   D+   RR++GM+FQ  AL E  TV +N+  G
Sbjct:    4 IHNLQKSYSTGDKALKGVNLSVQPGELLGLIGPSGAGKSTLIRCVNRLVEPSEGRVLLNGKDLANLGRHDLRMARRRIGMIFQEYALVERLTVMENLLSG 103          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR1_MOUSE (Multidrug resistance protein 1 OS=Mus musculus GN=Abcb1 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.072e-17
Identity = 40/103 (38.83%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  133 KFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            KF   +    +    P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +G+VFLDG++I  L+V  LR  +G++ Q P LF+ ++A+NI YG   R
Sbjct: 1034 KFNGVQFNYPTRPNIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSR 1136          

HSP 2 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 37/83 (44.58%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            ILKG+N+++  G  + ++G SG GKST ++ + RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG
Sbjct:  408 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLEGVVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYG 490          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: POTA_LACJO (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus johnsonii GN=potA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 47/108 (43.52%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF-EGTVADNIRYGPQLRGKKLTE 459
            ++  +RKE DDG   LK +N+ I  G    ++GPSGSGK+T+LR +    EP SG VF DG+DIT+LD  + +RK+  +FQ  ALF    V +N+ +G Q++ K   E
Sbjct:    6 KLKHVRKEYDDGFVALKDINLTIESGKFYSLLGPSGSGKTTILRIIAGFSEPTSGQVFFDGQDITNLD--AAKRKINTVFQNYALFPHMNVFENVAFGLQIKKKDKQE 111          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_NEUCR (Iron-sulfur clusters transporter atm-1, mitochondrial OS=Neurospora crassa GN=atm-1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  175 APILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +PIL+ +++ IP G  + I+GPSG GKSTLLR L R ++P  G +++DG+DI  + + SLRR +G++ Q   LF  TV  NIRYG
Sbjct:  462 SPILRDLSLTIPAGKKVAIVGPSGCGKSTLLRLLFRFYDPQKGAIYIDGQDIRSVTLESLRRAIGVVPQDTPLFNDTVEHNIRYG 546          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB3_DICDI (ABC transporter B family member 3 OS=Dictyostelium discoideum GN=abcB3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.054e-16
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            PI  G N++I  G  +G++G SG GKST++  L R ++P  G + LDG DI   +V  LR+K+G++ Q P LF  T+++NIRYG +
Sbjct:  530 PIFNGFNLKIKPGQTVGLVGDSGGGKSTIISLLERFYDPCQGEILLDGEDIRKFNVRGLRQKIGLVNQEPVLFATTISENIRYGKE 615          

HSP 2 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            + +G  + +  G    ++G SG GKST L  L R + P  G +F+DG +I +L+V  LR   G++ Q P LF GT+ADNIRYG
Sbjct: 1209 VFRGFTLTLQSGTTTALVGDSGGGKSTCLSLLQRFYNPVVGEIFIDGHNIKNLNVRHLRHLFGLVGQEPTLFSGTIADNIRYG 1291          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR2_RAT (Multidrug resistance protein 2 OS=Rattus norvegicus GN=Abcb4 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.377e-16
Identity = 43/98 (43.88%), Postives = 67/98 (68.37%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            ILKG+N+++  G  + ++G SG GKST ++ L RL++P  GT+ +DG+DI + +V  LR  +G++ Q P LF  T+A+NIRYG   RG  +T +E+ K
Sbjct:  408 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGTISIDGQDIRNFNVRCLREFIGVVSQEPVLFSTTIAENIRYG---RG-NVTMDEIKK 501          

HSP 2 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +GTV LDG++   L+V  LR ++G++ Q P LF+ ++A NI YG   R
Sbjct: 1049 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGTVLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAKNIAYGDNSR 1136          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_DEHSC (Phosphate import ATP-binding protein pstB OS=Dehalococcoides sp. (strain CBDB1) GN=pstB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 46/95 (48.42%), Postives = 65/95 (68.42%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            +LK +NM+ P+  I  IIGPSG GKSTLLRALNR+ +  S     G V LD  +I   +LDV++LR++VGM+FQ P  F  ++ DN+ +GP++ G
Sbjct:   19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLG 113          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR49_DROME (Multidrug resistance protein homolog 49 OS=Drosophila melanogaster GN=Mdr49 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.798e-16
Identity = 41/90 (45.56%), Postives = 61/90 (67.78%), Query Frame = 1
Query:  172 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            G PIL+G+N+ I K   + ++GPSGSGKST ++ L R ++P SG+V L G   T+  + +LR K+G++ Q P LF+ T+A+NI YG   R
Sbjct: 1073 GTPILQGLNLTIKKSTTVALVGPSGSGKSTCVQLLLRYYDPVSGSVNLSGVPSTEFPLDTLRSKLGLVSQEPVLFDRTIAENIAYGNNFR 1162          

HSP 2 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 42/113 (37.17%), Postives = 68/113 (60.18%), Query Frame = 1
Query:  112 DNQIQKPKFRVGELRKE-------SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            D +  +P+   G +R E       +     ILKG+ +++  G  +  +G SG GKSTL++ + R ++P +G+V LDGRD+  L+V  LR ++G++ Q P LF  T+ +NIRYG
Sbjct:  389 DEKGNRPENTAGHIRFEGIRFRYPARPDVEILKGLTVDVLPGQTVAFVGASGCGKSTLIQLMQRFYDPEAGSVKLDGRDLRTLNVGWLRSQIGVVGQEPVLFATTIGENIRYG 501          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR3_CRIGR (Multidrug resistance protein 3 OS=Cricetulus griseus GN=PGY3 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 38/83 (45.78%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            ILKG+N+++  G  + ++G SG GK+T L+ L RL++P  GT+ +DG+DI + +V  LR  +G++ Q P LF  T+A+NIRYG
Sbjct:  411 ILKGLNLKVQSGQTVALVGNSGCGKTTTLQLLQRLYDPTEGTISIDGQDIRNFNVRYLREIIGVVSQEPVLFSTTIAENIRYG 493          

HSP 2 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 36/88 (40.91%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +GTV LDG++   L++  LR ++G++ Q P LF+ ++A+NI YG   R
Sbjct: 1052 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGTVLLDGQEAKKLNIQWLRAQLGIVSQEPVLFDCSIAENIAYGDNSR 1139          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATM1_DEBHA6.181e-1742.57Iron-sulfur clusters transporter ATM1, mitochondri... [more]
PHNC_ALCFA8.072e-1746.00Phosphonates import ATP-binding protein phnC OS=Al... [more]
MDR1_MOUSE8.072e-1738.83Multidrug resistance protein 1 OS=Mus musculus GN=... [more]
POTA_LACJO1.054e-1643.52Spermidine/putrescine import ATP-binding protein p... [more]
ATM1_NEUCR1.054e-1648.24Iron-sulfur clusters transporter atm-1, mitochondr... [more]
ABCB3_DICDI1.054e-1644.19ABC transporter B family member 3 OS=Dictyostelium... [more]
MDR2_RAT1.377e-1643.88Multidrug resistance protein 2 OS=Rattus norvegicu... [more]
PSTB_DEHSC1.798e-1648.42Phosphate import ATP-binding protein pstB OS=Dehal... [more]
MDR49_DROME1.798e-1645.56Multidrug resistance protein homolog 49 OS=Drosoph... [more]
MDR3_CRIGR2.349e-1645.78Multidrug resistance protein 3 OS=Cricetulus grise... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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