FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN_BURTA (Methionine import ATP-binding protein metN OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=metN PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSLRRKVGMLFQ-IPALFEGTVADNIRYGPQLRGKKLTENE--VYKLLSL 486
            L  VN+ IP+G + GIIG SG+GKSTL+R +N L  P  G VF+DGRD+T L   ++   RR +GM+FQ    L   TV  N+    +L G K  E E  V  LL L
Sbjct:   21 LHNVNLTIPQGEVFGIIGRSGAGKSTLVRTINLLTRPSEGNVFVDGRDLTQLSAGELRGARRDIGMIFQHFNLLSSRTVFGNVALPLELAGVKRAEIEATVLPLLDL 127          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDL2_YEAST (ATP-dependent permease MDL2, mitochondrial OS=Saccharomyces cerevisiae GN=MDL2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/83 (45.78%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I K +N +I  G  + I+GPSG GKST+   L R + P +GT+ +D +DI+ L+  SLRR +G++ Q P L  GT+ DNI YG
Sbjct:  463 IFKNLNFKIAPGSSVCIVGPSGRGKSTIALLLLRYYNPTTGTITIDNQDISKLNCKSLRRHIGIVQQEPVLMSGTIRDNITYG 545          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB4C_ARATH (ABC transporter C family member 4 OS=Arabidopsis thaliana GN=ABCC4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 38/80 (47.50%), Postives = 55/80 (68.75%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNI 420
            +LKG+ ++I  G  +G++G +GSGKSTL++ L RL EP  G + +DG DI+ L +  LR + G++ Q P LFEGTV  NI
Sbjct: 1290 VLKGITLDIKGGEKVGVVGRTGSGKSTLIQVLFRLVEPSGGKIIIDGIDISTLGLHDLRSRFGIIPQEPVLFEGTVRSNI 1369          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB23B_ARATH (ABC transporter B family member 23, mitochondrial OS=Arabidopsis thaliana GN=ABCB23 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVY 471
            IL G++ E+P G  + I+G SGSGKST+LR + R ++  SG V +DG+DI ++ + SLR  +G++ Q   LF  T+  NI YG        TE EVY
Sbjct:  452 ILDGISFEVPAGKSVAIVGSSGSGKSTILRMIFRFFDTDSGNVRIDGQDIKEVTLESLRSCIGVVPQDTVLFNDTIFHNIHYG----NLSATEEEVY 544          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB14B_ARATH (ABC transporter B family member 14 OS=Arabidopsis thaliana GN=ABCB14 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.683e-14
Identity = 33/83 (39.76%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I K +N+ +  G  + ++GPSGSGKST++  + R ++P +G + +DG DI  +++ SLR+K+ ++ Q PALF  ++ +NI+YG
Sbjct: 1023 IFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGHDIKSVNLRSLRKKLALVQQEPALFSTSIHENIKYG 1105          

HSP 2 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            + + ++  I  G     +GPSGSGKST++  + R +EP SG + LDG DI +L +  LR ++G++ Q PALF  T+A NI  G +
Sbjct:  389 VFENLSFTIHSGKTFAFVGPSGSGKSTIISMVQRFYEPRSGEILLDGNDIKNLKLKWLREQMGLVSQEPALFATTIASNILLGKE 473          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_ROSDO (Phosphate import ATP-binding protein pstB OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=pstB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 44/106 (41.51%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            +K VN+EI    +   IGPSG GKST LR LNR+ +        G + +DG DI D  +D + LR KVGM+FQ P  F  ++ DN+ YGP++ G    + E+  L+
Sbjct:   33 IKDVNVEIQDKTVTAFIGPSGCGKSTFLRCLNRMNDTIDVCRVQGRITIDGEDIYDKRVDPVQLRAKVGMVFQKPNPFPKSIYDNVAYGPRIHGLAQNKAELDNLV 138          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METAC (Phosphate import ATP-binding protein pstB OS=Methanosarcina acetivorans GN=pstB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 41/94 (43.62%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            LK ++M+IPK  +  +IGPSG GKST +R LNR+ +        G V ++  DI +  +DV+ LR++VGM+FQ P  F  ++ DNI YGP++ G
Sbjct:   28 LKNISMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEDEDIYEKGVDVVELRKRVGMVFQKPNPFPMSIYDNIAYGPRIHG 121          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BRUSU (Phosphate import ATP-binding protein pstB OS=Brucella suis GN=pstB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 41/103 (39.81%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  193 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            V+++IP+ ++  +IGPSG GKST LR+LNR+ +       +G + LD  DI D  LDV+ LR +VGM+FQ P  F  ++ +N+ YGP++ G   ++ E+ +++
Sbjct:   44 VDLDIPEKMVTALIGPSGCGKSTFLRSLNRMNDTIEGCRIAGRITLDNEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELEEIV 146          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BRUME (Phosphate import ATP-binding protein pstB OS=Brucella melitensis GN=pstB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 41/103 (39.81%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  193 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            V+++IP+ ++  +IGPSG GKST LR+LNR+ +       +G + LD  DI D  LDV+ LR +VGM+FQ P  F  ++ +N+ YGP++ G   ++ E+ +++
Sbjct:   44 VDLDIPEKMVTALIGPSGCGKSTFLRSLNRMNDTIEGCRIAGRITLDNEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELEEIV 146          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BRUAB (Phosphate import ATP-binding protein pstB OS=Brucella abortus GN=pstB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 41/103 (39.81%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  193 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPP-----SGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            V+++IP+ ++  +IGPSG GKST LR+LNR+ +       +G + LD  DI D  LDV+ LR +VGM+FQ P  F  ++ +N+ YGP++ G   ++ E+ +++
Sbjct:   44 VDLDIPEKMVTALIGPSGCGKSTFLRSLNRMNDTIEGCRIAGRITLDNEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELEEIV 146          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN_BURTA1.683e-1445.79Methionine import ATP-binding protein metN OS=Burk... [more]
MDL2_YEAST1.683e-1445.78ATP-dependent permease MDL2, mitochondrial OS=Sacc... [more]
AB4C_ARATH1.683e-1447.50ABC transporter C family member 4 OS=Arabidopsis t... [more]
AB23B_ARATH1.683e-1443.30ABC transporter B family member 23, mitochondrial ... [more]
AB14B_ARATH1.683e-1439.76ABC transporter B family member 14 OS=Arabidopsis ... [more]
PSTB_ROSDO2.198e-1441.51Phosphate import ATP-binding protein pstB OS=Roseo... [more]
PSTB_METAC2.198e-1443.62Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_BRUSU2.198e-1439.81Phosphate import ATP-binding protein pstB OS=Bruce... [more]
PSTB_BRUME2.198e-1439.81Phosphate import ATP-binding protein pstB OS=Bruce... [more]
PSTB_BRUAB2.198e-1439.81Phosphate import ATP-binding protein pstB OS=Bruce... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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