FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_CHAGB (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Chaetomium globosum GN=ATM1 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.349e-16
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            PIL  +++ IP G  + ++GPSG GKSTLLR L R ++P SG +F+D +DI D+ + SLRR +G++ Q   LF  TV  NIRYG
Sbjct:  359 PILNNLSVTIPAGKKVAVVGPSGCGKSTLLRLLFRSYDPQSGRIFIDDQDIRDVSLDSLRRSIGVVPQDTPLFNDTVELNIRYG 442          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METBU (Phosphate import ATP-binding protein pstB OS=Methanococcoides burtonii (strain DSM 6242) GN=pstB PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.068e-16
Identity = 48/108 (44.44%), Postives = 68/108 (62.96%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--KKLTENEVYKLL 480
            LK ++++IP+  +  +IGPSG GKST LR LNR+ +        G V +DG +I   D+DV+ LR+ VGM+FQ P  F  ++ DNI YGP++ G  K  TE  V+K L
Sbjct:   25 LKDISLDIPEKSVTALIGPSGCGKSTFLRCLNRMNDLVKSCSIEGEVLVDGENIYDKDVDVVDLRKNVGMVFQKPNPFPMSIYDNIAYGPKIHGCSKSETEERVHKAL 132          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_DEHE1 (Phosphate import ATP-binding protein pstB OS=Dehalococcoides ethenogenes (strain 195) GN=pstB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            +LK +NM+ P   I  IIGPSG GKSTLLRALNR+ +  SG      V LD  ++   +LDV++LR++VGM+FQ P  F  ++ DN+ +GP++ G
Sbjct:   19 VLKNINMDFPDRQITAIIGPSGCGKSTLLRALNRMNDLVSGARLEGEVLLDNENVYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLG 113          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_ARCFU (Phosphate import ATP-binding protein pstB OS=Archaeoglobus fulgidus GN=pstB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            ++ VN+EI +  +  IIGPSG GKSTLLR+LNRL E   G      V  DG++I D  +D + LRR++GM+FQ P  F  ++ DN+ YGP++ G K
Sbjct:   20 IRNVNLEIYRNKVTAIIGPSGCGKSTLLRSLNRLIELVDGVRIEGEVIFDGKNIYDDGVDAVELRRRIGMVFQHPNPFPKSIFDNVAYGPRVHGIK 115          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_ALHEH (Phosphate import ATP-binding protein pstB OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=pstB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.006e-16
Identity = 46/95 (48.42%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            +LKGV+MEIP+G I   IGPSG GKSTLLR  NR+ +        G + +DG DI D  +D+  LRR+VGM+FQ P  F  ++ +N+ YG +L+G
Sbjct:   53 VLKGVDMEIPRGRITAFIGPSGCGKSTLLRCFNRMNDLIDNCRIEGHIRIDGEDIYDRRVDIPELRRRVGMVFQKPNPFPKSIYENVAYGLRLQG 147          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCBA_MOUSE (ATP-binding cassette sub-family B member 10, mitochondrial OS=Mus musculus GN=Abcb10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.232e-16
Identity = 40/83 (48.19%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            + +  ++ IP G +  ++GPSGSGKST++  L RL++P SGTV LDG DI  L+ + LR K+G + Q P LF  +VA+NI YG
Sbjct:  474 VFQDFSLSIPSGSVTALVGPSGSGKSTVVSLLLRLYDPNSGTVSLDGHDIRQLNPVWLRSKIGTVSQEPVLFSCSVAENIAYG 556          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METST (Phosphate import ATP-binding protein pstB OS=Methanosphaera stadtmanae (strain DSM 3091) GN=pstB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 46/111 (41.44%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            D   +LK +N +I K  +  +IGPSG GKST LR LNR+ +        G + LDG+DI D  +DV+ LR+KVGM+FQ    F  ++ DN+ YG ++ G+K  E+++ K++
Sbjct:   16 DDHNVLKNINTDIEKNSVTALIGPSGCGKSTFLRTLNRMNDLIPIFRKEGQILLDGKDIYDNNVDVVELRKKVGMVFQKANPFPKSIYDNVAYGLRIHGEK-DEDKIEKIV 125          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_ALCBS (Phosphate import ATP-binding protein pstB OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=pstB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query:  121 IQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            +  PK R+ ++    DD   I  GV+++I K  ++ +IGPSG GKST LR LNR+ +        G++ L+ +D+ D  LDV+ LR +VGM+FQ P  F  ++ DN+ YGP++ G
Sbjct:   45 VDDPKMRLRDVEVFYDDNQAI-HGVSLDIGKNEVVSLIGPSGCGKSTFLRCLNRMNDTIDICKVKGSLHLESQDLYDPKLDVVELRARVGMVFQKPNPFPKSIYDNVAYGPRIHG 158          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB1_MAGSA (Phosphate import ATP-binding protein pstB 1 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=pstB1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 44/103 (42.72%), Postives = 68/103 (66.02%), Query Frame = 1
Query:  193 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            VN++IP G +  +IGPSG GKST LR +NR+ +       SG++FLDG DI D  +DV+ LR +VGM+FQ P  F  ++ +N+ +GP+L G     +E+ +++
Sbjct:   31 VNLDIPVGQVTALIGPSGCGKSTFLRCINRMNDLVEIARVSGSLFLDGIDIQDAAMDVVQLRARVGMVFQRPNPFPKSIYENVAFGPRLHGLAAGADELDEIV 133          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: POTA_LACGA (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=potA PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALF-EGTVADNIRYGPQLRGKKLTE 459
            ++  +RKE DDG   LK +N+ I  G    ++GPSGSGK+T+LR +    EP SG VF  G+DIT+LD  + +RK+  +FQ  ALF    V +N+ +G Q++ K   E
Sbjct:    6 KLTHVRKEYDDGFVALKDINLTIESGKFYSLLGPSGSGKTTILRIIAGFSEPTSGQVFFAGKDITNLD--AAKRKINTVFQNYALFPHMNVFENVAFGLQIKKKDKQE 111          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATM1_CHAGB2.349e-1650.00Iron-sulfur clusters transporter ATM1, mitochondri... [more]
PSTB_METBU3.068e-1644.44Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_DEHE14.006e-1647.37Phosphate import ATP-binding protein pstB OS=Dehal... [more]
PSTB_ARCFU4.006e-1646.88Phosphate import ATP-binding protein pstB OS=Archa... [more]
PSTB_ALHEH4.006e-1648.42Phosphate import ATP-binding protein pstB OS=Alkal... [more]
ABCBA_MOUSE5.232e-1648.19ATP-binding cassette sub-family B member 10, mitoc... [more]
PSTB_METST6.834e-1641.44Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_ALCBS6.834e-1640.00Phosphate import ATP-binding protein pstB OS=Alcan... [more]
PSTB1_MAGSA6.834e-1642.72Phosphate import ATP-binding protein pstB 1 OS=Mag... [more]
POTA_LACGA6.834e-1642.59Spermidine/putrescine import ATP-binding protein p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
back to top