FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:1..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN_DESHY (Methionine import ATP-binding protein metN OS=Desulfitobacterium hafniense (strain Y51) GN=metN PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 48/107 (44.86%), Postives = 71/107 (66.36%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEG-TVADNIRYGPQLRGKKLTENE--VYKLLSL 486
            ++ ++++IPKG I GIIG SG+GKSTL+R +NRL EP  G + +DG+D+T +  + L   R+K+GM+FQ   L +  TV DNI +  ++ G K  E E  V +LL L
Sbjct:   21 IEDISLDIPKGAIYGIIGLSGAGKSTLVRCINRLEEPTGGKIIIDGQDLTAMSAVELRQARQKIGMIFQHFHLLQSRTVFDNIAFPLEIAGFKKPEIEARVKELLPL 127          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR2_MOUSE (Multidrug resistance protein 2 OS=Mus musculus GN=Abcb4 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            ILKG+N+++  G  + ++G SG GKST ++ L RL++P  G + +DG+DI + +V  LR  +G++ Q P LF  T+A+NIRYG   RG  +T +E+ K
Sbjct:  408 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPTEGKISIDGQDIRNFNVRCLREIIGVVSQEPVLFSTTIAENIRYG---RG-NVTMDEIEK 501          

HSP 2 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 36/88 (40.91%), Postives = 63/88 (71.59%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +G+V LDG++   L+V  LR ++G++ Q P LF+ ++A+NI YG   R
Sbjct: 1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1134          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_USTMA (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ustilago maydis GN=ATM1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 43/113 (38.05%), Postives = 64/113 (56.64%), Query Frame = 1
Query:  106 EDDNQIQKPKFRVGELRKES-----DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            ++D      K   GE+R E+         PI + ++  +P G     +GPSG GKST+ R L R +EP SG +++DG+DIT + + SLRR +G++ Q   LF   +  NIRYG
Sbjct:  482 KEDKNAPPLKVSGGEIRFENVTFGYHPDRPIFRNISFTVPAGYKTAFVGPSGCGKSTIFRLLFRFYEPQSGKIYIDGQDITKVSLESLRRHIGVVPQDTPLFNDDIRHNIRYG 594          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.834e-16
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  118 QIQKPKFRVGELR-KESDDGAP------ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            QIQ P   +GE+  K+ +   P      +LKG+N+++ KG I  ++GPSG GKST++  + R ++P SG++  DG DI +LD +  R  +G + Q P LF G++ DNI +G
Sbjct:  658 QIQNP---LGEIELKDVEFSYPTRPNNSVLKGLNLKLSKGTITALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFG 765          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_PYRAE (Phosphate import ATP-binding protein pstB OS=Pyrobaculum aerophilum GN=pstB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 1
Query:  157 KESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITDLDVLSLRRKVGMLFQIP------ALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            K S     +LKGVN+EI +  I  ++GPSGSGKSTLLR  NRL E       SG V LDG+D+  +DV+ LRR+V M+FQIP      ++FE  VA  ++    ++ KK  E  V + L
Sbjct:   10 KLSFGNVEVLKGVNLEIKERTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVLLDGQDVFKMDVIELRRRVQMIFQIPNPIPNLSIFE-NVALGLKLNRIVKSKKELEARVRQAL 127          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_GIBZE (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Gibberella zeae GN=ATM1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 45/100 (45.00%), Postives = 65/100 (65.00%), Query Frame = 1
Query:  145 GELRKESDDGA-----PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            GE++ E+ + A     PIL+ +++ IP G  + ++GPSG GKSTLLR L R ++   G V +D +DI D+D+ SLRR +G++ Q   LF  TV  NIRYG
Sbjct:  437 GEIKFENVNFAYHPNRPILRDLSLTIPAGKKVAVVGPSGCGKSTLLRLLFRSYDVQGGRVLIDDQDIRDVDLESLRRSIGVVPQDTPLFNDTVEHNIRYG 536          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_ASHGO (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Ashbya gossypii GN=ATM1 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 48/129 (37.21%), Postives = 77/129 (59.69%), Query Frame = 1
Query:   46 SLFRDEVREHLLTVPGEAEAEDDNQIQKP-KFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            SLF+  ++++ +T+     A++   I KP   R   +    D    IL  V+  IP G+   I+GPSGSGKST+L+ + R +EP  G + + G DI DLD+LSLR+ +G++ Q   LF  T+ +N+++G
Sbjct:  407 SLFK--LQKNQVTIKNSPNAQN-LPIHKPLDIRFENVTFGYDPERRILNNVSFTIPAGMKTAIVGPSGSGKSTILKLVFRFYEPEQGRILVGGTDIRDLDLLSLRKAIGVVPQDTPLFNDTIWENVKFG 532          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB2B_ARATH (ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 39/83 (46.99%), Postives = 58/83 (69.88%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I   +N+ IP G I+ ++G SGSGKST++  + R +EP SG V LDG +I++LD+  LR ++G++ Q PALF  T+ +NI YG
Sbjct:  378 IFDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQIGLVNQEPALFATTIRENILYG 460          

HSP 2 Score: 72.7886 bits (177), Expect = 9.236e-13
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 1
Query:   61 EVREHLLTVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            E+ +    + GE   E +N     + +       S     I +  ++ +  G  M ++G SGSGKS+++  + R ++P +G V ++G+DI  LD+ +LR+ +G++ Q PALF  T+ +NI YG
Sbjct:  967 EILDRKTQIVGETSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGKSSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYG 1089          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_MOOTA (Phosphate import ATP-binding protein pstB OS=Moorella thermoacetica (strain ATCC 39073) GN=pstB PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            LK VN+EI    +  +IGPSG GKST LR LNRL +       SG + LDG++I   ++DV++LR++VGM+FQ P  F  ++ DNI YGP++ G
Sbjct:   21 LKDVNLEIQAHAVTALIGPSGCGKSTFLRTLNRLNDLIDGVRISGEILLDGQNIYAPEVDVVALRKRVGMVFQRPNPFPMSIYDNIAYGPRIHG 114          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB2_NATPD (Phosphate import ATP-binding protein pstB 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDI---TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            DG  +L+ V + + +G  + IIGPSG+GK+TLLR L    EP  GT+ LDG D+   ++   L+ RR++GM+FQ   LF+ TV  N+RYG  +R
Sbjct:   46 DGTAVLESVTLAVDRGETVAIIGPSGTGKTTLLRLLALFSEPDDGTIGLDGTDVWRQSERQRLAARRRIGMVFQKANLFDTTVRRNVRYGLSVR 139          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METN_DESHY6.834e-1644.86Methionine import ATP-binding protein metN OS=Desu... [more]
MDR2_MOUSE6.834e-1642.86Multidrug resistance protein 2 OS=Mus musculus GN=... [more]
ATM1_USTMA6.834e-1638.05Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCB1_DICDI6.834e-1639.64ABC transporter B family member 1 OS=Dictyostelium... [more]
PSTB_PYRAE8.925e-1644.54Phosphate import ATP-binding protein pstB OS=Pyrob... [more]
ATM1_GIBZE8.925e-1645.00Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ATM1_ASHGO8.925e-1637.21Iron-sulfur clusters transporter ATM1, mitochondri... [more]
AB2B_ARATH8.925e-1646.99ABC transporter B family member 2 OS=Arabidopsis t... [more]
PSTB_MOOTA1.166e-1547.87Phosphate import ATP-binding protein pstB OS=Moore... [more]
PSTB2_NATPD1.166e-1544.68Phosphate import ATP-binding protein pstB 2 OS=Nat... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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