FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: POTA_LACAC (Spermidine/putrescine import ATP-binding protein potA OS=Lactobacillus acidophilus GN=potA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.166e-15
Identity = 45/108 (41.67%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVADNIRYGPQLRGKKLTE 459
            ++  + K  DDG   LK +N+ I  G    ++GPSGSGKST+LR +    +P SG VF DG+DITDLD  + +R +  +FQ  ALF    V +N+ +G +++ K L E
Sbjct:    5 KLKHITKRYDDGFIALKDINITIESGKFYSLLGPSGSGKSTILRIIAGFTQPSSGQVFFDGKDITDLD--ASKRHINTVFQNYALFPHLNVFENVAFGLKIKKKPLNE 110          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB1_SYMTH (Phosphate import ATP-binding protein pstB 1 OS=Symbiobacterium thermophilum GN=pstB1 PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 42/96 (43.75%), Postives = 64/96 (66.67%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            L+ +++EIP   +  +IGPSG GKS+ LR LNR+ +        GT+ LDG DI    +DV++LRR+VGM+FQ P  F  ++ DN+ YGP++ G++
Sbjct:   11 LRSISLEIPANRVTALIGPSGCGKSSFLRCLNRMNDLIPGARVEGTITLDGADIYAPGVDVVALRRRVGMVFQRPNPFPMSIYDNVAYGPRIHGER 106          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR1_RAT (Multidrug resistance protein 1 OS=Rattus norvegicus GN=Abcb1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 41/98 (41.84%), Postives = 65/98 (66.33%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            ILKG+N+++  G  + ++G SG GKST ++ L RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG +     +T +E+ K
Sbjct:  408 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLLQRLYDPIEGEVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGRE----NVTMDEIEK 501          

HSP 2 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 38/88 (43.18%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G++ E+ KG  + ++G SG GKST+++ L R + P +GTVFLDG++I  L+V  + R +G++ Q P LF+ ++A+NI YG   R
Sbjct: 1051 PVLQGLSFEVKKGQTLRLVGSSGCGKSTVVQLLERFYNPMAGTVFLDGKEIKQLNVQCV-RALGIVSQEPILFDCSIAENIAYGDNSR 1137          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR1_HUMAN (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 1.522e-15
Identity = 45/121 (37.19%), Postives = 71/121 (58.68%), Query Frame = 1
Query:  112 DNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            DN     +FR       S     ILKG+N+++  G  + ++G SG GKST ++ + RL++P  G V +DG+DI  ++V  LR  +G++ Q P LF  T+A+NIRYG +     +T +E+ K
Sbjct:  386 DNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGRE----NVTMDEIEK 502          

HSP 2 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 37/88 (42.05%), Postives = 62/88 (70.45%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +G V LDG++I  L+V  LR  +G++ Q P LF+ ++A+NI YG   R
Sbjct: 1051 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSR 1138          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METBF (Phosphate import ATP-binding protein pstB OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=pstB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 43/94 (45.74%), Postives = 61/94 (64.89%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            LK V+M+IPK  I  +IGPSG GKST +R LNR+ +        G V ++G+DI   D+D + LR+ VGM+FQ P  F  ++ DN+ YGP++ G
Sbjct:   28 LKNVSMQIPKNSITALIGPSGCGKSTFIRCLNRMNDLINNCRIEGKVSIEGKDIYEPDVDAVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHG 121          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPS (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain SM101 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            LK +N++I +  +  +IGPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G K
Sbjct:   23 LKKINIDIKENEVTALIGPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIK 117          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_CLOPE (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens GN=pstB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            LK +N++I +  +  +IGPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G K
Sbjct:   23 LKKINIDIKENEVTALIGPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIK 117          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_CLOP1 (Phosphate import ATP-binding protein pstB OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pstB PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 44/95 (46.32%), Postives = 63/95 (66.32%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI-TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            LK +N++I +  +  +IGPSG GKST LR LNR+ +        G + +DG+DI  D DV++LR KVGM+FQ P LF  ++ DN+ YGP++ G K
Sbjct:   23 LKKINIDIKENEVTALIGPSGCGKSTFLRTLNRMNDLIPIVRIEGEIQVDGKDIYKDDDVIALRTKVGMVFQKPNLFPMSIYDNVAYGPRVHGIK 117          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: CYSA_SYNY3 (Sulfate/thiosulfate import ATP-binding protein cysA OS=Synechocystis sp. (strain PCC 6803) GN=cysA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 45/104 (43.27%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEG-TVADNIRYGPQLR--GKKLTENEVYKLLSL 486
            LK +N+E+P G ++ ++GPSGSGKSTLLRA+  L EP  G + ++G+D T +D+   +R +G +FQ  ALF+  T+  NI +G ++R      T+  V +LLSL
Sbjct:   18 LKDINLEVPDGKLVALLGPSGSGKSTLLRAIAGLEEPDQGQIIINGQDATHVDI--RKRNIGFVFQHYALFKHLTIRQNIAFGLEIRKHPPAKTKERVEELLSL 119          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: CBIO_METTH (Putative cobalt import ATP-binding protein cbiO OS=Methanobacterium thermoautotrophicum GN=cbiO PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 43/104 (41.35%), Postives = 69/104 (66.35%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGR--DITDLDVLSLRRKVGMLFQIP--ALFEGTVADNIRYGPQLRGKKLTENEV 468
            DG P L+G+NM++ +G  + +IGP+G+GKSTL   LN + +P +G V +DG   D +  +++ +R+KVG++FQ P   LF  TV +++ +GP   G  L E+EV
Sbjct:   13 DGTPALRGINMKVERGERVAVIGPNGAGKSTLFLHLNGILKPAAGEVIIDGERVDYSKDELIKIRQKVGIVFQNPDDQLFSPTVREDVAFGPMNLG--LPEDEV 114          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
POTA_LACAC1.166e-1541.67Spermidine/putrescine import ATP-binding protein p... [more]
PSTB1_SYMTH1.522e-1543.75Phosphate import ATP-binding protein pstB 1 OS=Sym... [more]
MDR1_RAT1.522e-1541.84Multidrug resistance protein 1 OS=Rattus norvegicu... [more]
MDR1_HUMAN1.522e-1537.19Multidrug resistance protein 1 OS=Homo sapiens GN=... [more]
PSTB_METBF1.988e-1545.74Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_CLOPS1.988e-1546.32Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOPE1.988e-1546.32Phosphate import ATP-binding protein pstB OS=Clost... [more]
PSTB_CLOP11.988e-1546.32Phosphate import ATP-binding protein pstB OS=Clost... [more]
CYSA_SYNY31.988e-1543.27Sulfate/thiosulfate import ATP-binding protein cys... [more]
CBIO_METTH1.988e-1541.35Putative cobalt import ATP-binding protein cbiO OS... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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