FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15480 contig Ccv1_Contig15480:1..487. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB7_RAT (ATP-binding cassette sub-family B member 7, mitochondrial OS=Rattus norvegicus GN=Abcb7 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.988e-15
Identity = 39/87 (44.83%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +G  +L GV+ E+P G  + I+G SGSGKST++R L R +EP  G+++L G++I D+ + SLRR VG++ Q   LF  T+  N+ YG
Sbjct:  483 EGQKVLSGVSFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNIQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYG 569          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_LACDA (Phosphate import ATP-binding protein pstB OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=pstB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSG-----TVFLDGRDIT--DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            L  +NM I K  I   IGPSG GKSTLLR+LNR+ +   G     ++ LDG DI   DLDV  LR++VGM+FQ P  F  +V DN+ YGP++ G
Sbjct:   21 LHDINMHIQKNEITAFIGPSGCGKSTLLRSLNRMNDLVEGCRIDGSIKLDGTDIYNGDLDVTVLRQRVGMVFQRPNPFPMSVYDNVAYGPRIHG 114          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_ACIAD (Phosphate import ATP-binding protein pstB OS=Acinetobacter sp. (strain ADP1) GN=pstB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 46/112 (41.07%), Postives = 70/112 (62.50%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG--------KKLTENEVYK 474
            +KG+++EI +  ++  IGPSG GKST LR LNR+ +       +G V LD +DI D  LDV+ LR +VGM+FQ P  F  ++ +N+ YGP+L G        +++ EN ++K
Sbjct:   71 IKGIDLEIYENEVIAFIGPSGCGKSTFLRTLNRMNDTIDSCRVTGKVLLDNQDIYDPNLDVVLLRAQVGMVFQKPNPFPKSIFENVAYGPKLHGLARDKYDLEEIVENSLHK 182          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB3_MAGSA (Phosphate import ATP-binding protein pstB 3 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=pstB3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 45/99 (45.45%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  172 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI---TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            G P LKGV+++I  G +  +IGPSG GKST LR LNR+ +       SG   LDG DI     +D + LR +VGM+FQ P  F  ++ DN+ +GP+L G
Sbjct:   21 GKPALKGVDLDIVAGEVNALIGPSGCGKSTFLRCLNRMNDTIPAAKVSGQATLDGEDIYGPAGMDPVLLRARVGMVFQRPNPFPKSIYDNVAFGPRLHG 119          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB2_MAGSA (Phosphate import ATP-binding protein pstB 2 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 42/106 (39.62%), Postives = 68/106 (64.15%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            L  ++++IP G +  +IGPSG GKST LR +NR+ +       +G++ LDG D+ D  LDV+ LR +VGM+FQ P  F  ++ DN+ YGP++ G    + E+ +++
Sbjct:   27 LHDIDLDIPAGEVTALIGPSGCGKSTFLRCINRMNDMVDGAKVTGSLTLDGSDVYDRSLDVVQLRARVGMVFQKPNPFPKSIYDNVAYGPRIHGLARDQAELDEIV 132          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN_HELHP (Methionine import ATP-binding protein metN OS=Helicobacter hepaticus GN=metN PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 50/122 (40.98%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQ-IPALFEGTVADNIRYGPQLR--GKKLTENEVYKLLSL 486
            ++  + K   +G   LK +++E+ KG IMGIIG SG+GKSTL+R +NRL EP SGT+F+DG ++  L    L   R+K+GM+FQ    L    V DN+ +  ++    KK  +  V +LL L
Sbjct:    3 KLNHINKTYPNGFVALKNIDLEVAKGDIMGIIGYSGAGKSTLIRIINRLEEPTSGTLFVDGVNMLGLKQKELQMQRQKIGMIFQHFNLLSARNVFDNVAFALEIAKWDKKAIKPRVDELLEL 124          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB7_HUMAN (ATP-binding cassette sub-family B member 7, mitochondrial OS=Homo sapiens GN=ABCB7 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +G  +L G++ E+P G  + I+G SGSGKST++R L R +EP  G+++L G++I D+ + SLRR VG++ Q   LF  T+  N+ YG
Sbjct:  483 EGQKVLSGISFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNIQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYG 569          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB2_DICDI (ABC transporter B family member 2 OS=Dictyostelium discoideum GN=abcB2 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 35/83 (42.17%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I    N+ I KG  + ++G SG GKS+++  L R ++P  G V+LDG +I ++++ SLRR +G++ Q P LF  ++A+NIRYG
Sbjct:  491 IFNNFNLTIKKGTTVALVGDSGGGKSSVIGLLERFYDPDEGEVYLDGTNIKEINIHSLRRNIGLVSQEPVLFANSIAENIRYG 573          

HSP 2 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            + +G N+ IP G  + ++G SG GKS+++  L R + P  G++ +DG +I DL++  LR  +G++ Q P LF GT+ +NI YG
Sbjct: 1176 VFQGFNLVIPHGKKVALVGNSGGGKSSVISLLERFYNPSQGSITIDGVNIKDLNLNWLRGNMGLVGQEPFLFSGTIFENIIYG 1258          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB13B_ARATH (ABC transporter B family member 13 OS=Arabidopsis thaliana GN=ABCB13 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.597e-15
Identity = 35/83 (42.17%), Postives = 59/83 (71.08%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I K +N+ +  G  + ++GPSGSGKST++  + R ++P +G + +DG+DI  L++ SLR+K+ ++ Q PALF  T+ +NI+YG
Sbjct: 1021 IFKNLNLRVSAGKSLAVVGPSGSGKSTVIGLIMRFYDPSNGNLCIDGQDIKTLNLRSLRKKLALVQQEPALFSTTIYENIKYG 1103          

HSP 2 Score: 72.4034 bits (176), Expect = 1.206e-12
Identity = 34/85 (40.00%), Postives = 51/85 (60.00%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            + + ++  I  G     +GPSGSGKST++  + R +EP SG + LDG DI  L +   R ++G++ Q PALF  T+A NI  G +
Sbjct:  388 VFENLSFTIRSGKTFAFVGPSGSGKSTIISMVQRFYEPNSGEILLDGNDIKSLKLKWFREQLGLVSQEPALFATTIASNILLGKE 472          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PHNC1_ROSDO (Phosphonates import ATP-binding protein phnC 1 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 47/101 (46.53%), Postives = 67/101 (66.34%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEG-TVADNIRYG 429
            R+ +L K    G   LK V++EIP+G ++ +IGPSG+GKSTL+R +NRL EP SG V+L   ++T L   +L   RR++GM+FQ  AL E  TV +N+  G
Sbjct:    3 RLEKLVKTYKTGDQALKEVDLEIPQGQVLALIGPSGAGKSTLIRCVNRLVEPSSGKVYLGNVELTGLSSSALRRERRRMGMIFQEYALVERLTVMENVLSG 103          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB7_RAT1.988e-1544.83ATP-binding cassette sub-family B member 7, mitoch... [more]
PSTB_LACDA2.597e-1550.00Phosphate import ATP-binding protein pstB OS=Lacto... [more]
PSTB_ACIAD2.597e-1541.07Phosphate import ATP-binding protein pstB OS=Acine... [more]
PSTB3_MAGSA2.597e-1545.45Phosphate import ATP-binding protein pstB 3 OS=Mag... [more]
PSTB2_MAGSA2.597e-1539.62Phosphate import ATP-binding protein pstB 2 OS=Mag... [more]
METN_HELHP2.597e-1540.98Methionine import ATP-binding protein metN OS=Heli... [more]
ABCB7_HUMAN2.597e-1543.68ATP-binding cassette sub-family B member 7, mitoch... [more]
ABCB2_DICDI2.597e-1542.17ABC transporter B family member 2 OS=Dictyostelium... [more]
AB13B_ARATH2.597e-1542.17ABC transporter B family member 13 OS=Arabidopsis ... [more]
PHNC1_ROSDO3.392e-1546.53Phosphonates import ATP-binding protein phnC 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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