FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MSBA_SYNAS (Lipid A export ATP-binding/permease protein msbA OS=Syntrophus aciditrophicus (strain SB) GN=msbA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            D  P+L+ +N+ I  G ++  +G SG GK+TL+  + R ++  +G + +DG DI D+ ++SLRR++G++ Q   LF  TV +NI YG Q
Sbjct:  362 DDTPVLRNINLTIRAGEVVAFVGMSGGGKTTLVNLIPRFYDVTAGQILIDGHDIRDVSLISLRRQIGIVTQQTILFNDTVRNNIAYGSQ 450          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR_ORYSJ (Putative multidrug resistance protein OS=Oryza sativa subsp. japonica GN=Os02g0190300 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 49/141 (34.75%), Postives = 76/141 (53.90%), Query Frame = 1
Query:   13 IEVIQKMPSTCSLFRDEVREHLLTVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            +EVI+++P   S    +  E L  V GE E           FR  E    S   +PI    N+ +P G  + ++G SGSGKST++  L R ++P +G V +DG DI  L +  LR ++G++ Q PALF  ++ +NI +G +
Sbjct:  333 LEVIRRVPKIDS--ESDTGEELANVTGEVE-----------FRNVEFCYPSRPESPIFVSFNLRVPAGRTVALVGGSGSGKSTVIALLERFYDPSAGEVMVDGVDIRRLRLKWLRAQMGLVSQEPALFATSIRENILFGKE 460          

HSP 2 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 1
Query:   58 DEVREHLLTVPGEAEAEDDN-QIQKPKFRVGELRKESDDGAP-------ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            D V      +  E E + DN Q  KP+   GE+     D A        I KG  + I  G    ++G SGSGKST++  + R ++P  G+V +DGRDI   ++ +LRR +G++ Q P LF GT+ +NI YG +
Sbjct:  965 DAVASVFAVLDRETEIDPDNPQGYKPEKLKGEVDIRGVDFAYPSRPDVIIFKGFTLSIQPGKSTALVGQSGSGKSTIIGLIERFYDPIRGSVKIDGRDIKAYNLRALRRHIGLVSQEPTLFAGTIRENIVYGTE 1098          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR3_HUMAN (Multidrug resistance protein 3 OS=Homo sapiens GN=ABCB4 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 41/98 (41.84%), Postives = 66/98 (67.35%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            ILKG+N+++  G  + ++G SG GKST ++ + RL++P  GT+ +DG+DI + +V  LR  +G++ Q P LF  T+A+NI YG   RG  +T +E+ K
Sbjct:  411 ILKGLNLKVQSGQTVALVGSSGCGKSTTVQLIQRLYDPDEGTINIDGQDIRNFNVNYLREIIGVVSQEPVLFSTTIAENICYG---RG-NVTMDEIKK 504          

HSP 2 Score: 78.1814 bits (191), Expect = 2.198e-14
Identity = 38/95 (40.00%), Postives = 64/95 (67.37%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-------LDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLR 441
            P+L+G+++E+ KG  + ++G SG GKST+++ L R ++P +GTVF       LDG++   L+V  LR ++G++ Q P LF+ ++A+NI YG   R
Sbjct: 1050 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGTVFVDFGFQLLDGQEAKKLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSR 1144          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB7_MOUSE (ATP-binding cassette sub-family B member 7, mitochondrial OS=Mus musculus GN=Abcb7 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 38/87 (43.68%), Postives = 59/87 (67.82%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +G  +L GV+ E+P G  + I+G SGSGKST++R L R +EP  G+++L G+++ D+ + SLRR VG++ Q   LF  T+  N+ YG
Sbjct:  483 EGQKVLNGVSFEVPAGKKVAIVGGSGSGKSTIVRLLFRFYEPQKGSIYLAGQNLQDVSLESLRRAVGVVPQDAVLFHNTIYYNLLYG 569          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB22B_ARATH (ABC transporter B family member 22 OS=Arabidopsis thaliana GN=ABCB22 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.392e-15
Identity = 40/96 (41.67%), Postives = 61/96 (63.54%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEV 468
            I K  +++I +G    I+GPSGSGKST++  + R ++P  G V +DGRDI    + SLR+ +G++ Q P LF GT+ +NI YG      K+ E+E+
Sbjct: 1034 IFKNFSIDIDEGKSTAIVGPSGSGKSTIIGLIERFYDPLKGIVKIDGRDIRSYHLRSLRQHIGLVSQEPILFAGTIRENIMYGG--ASDKIDESEI 1127          

HSP 2 Score: 70.8626 bits (172), Expect = 3.510e-12
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 1
Query:   13 IEVIQKMPSTCSLFRDEVREHLL-TVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQ 435
            IEVI+++P   S   D  R  +L  + GE +           F+  +    S    PI   + + IP G  + ++G SGSGKST++  L R ++P  G + +DG  I  L V  LR ++G++ Q PALF  ++ +NI +G +
Sbjct:  353 IEVIKRVPDIDS---DNPRGQVLENIKGEVQ-----------FKHVKFMYSSRPETPIFDDLCLRIPSGKSVALVGGSGSGKSTVISLLQRFYDPIVGEILIDGVSIKKLQVKWLRSQMGLVSQEPALFATSIEENILFGKE 480          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_METMA (Phosphate import ATP-binding protein pstB OS=Methanosarcina mazei GN=pstB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 41/94 (43.62%), Postives = 62/94 (65.96%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            LK V+++IP+  +  +IGPSG GKST +R LNR+ +        G V ++  DI  TD+DV+ LR++VGM+FQ P  F  ++ DN+ YGP++ G
Sbjct:   28 LKNVSLKIPRNSVTALIGPSGCGKSTFIRCLNRMNDLVKNCRIEGKVLIENEDIYGTDVDVVELRKQVGMVFQKPNPFPMSIYDNVAYGPRIHG 121          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BORBU (Phosphate import ATP-binding protein pstB OS=Borrelia burgdorferi GN=pstB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            L  +NM+I K  I  +IGPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G K
Sbjct:   29 LNKINMKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTK 124          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB2_CHRSD (Phosphate import ATP-binding protein pstB 2 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=pstB2 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 48/116 (41.38%), Postives = 72/116 (62.07%), Query Frame = 1
Query:  169 DGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG----KKLTENEVYKLLS 483
            D  P L  + +++P+  +   IGPSG GKSTLLRALNRL +       +G + L+G+DI   ++DV  LRR+VGM+FQ P  F  ++ +N+ YG +L+G    ++L E   + LLS
Sbjct:   21 DDKPALSDLTLKVPRHRVTAFIGPSGCGKSTLLRALNRLHDLNDQVTRTGRIRLEGQDIHAREVDVAELRRRVGMVFQAPNPFPMSIYENVAYGLRLQGIRRKRELDEIIEWALLS 136          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PHNC_WOLSU (Phosphonates import ATP-binding protein phnC OS=Wolinella succinogenes GN=phnC PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 46/101 (45.54%), Postives = 66/101 (65.35%), Query Frame = 1
Query:  139 RVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSL---RRKVGMLFQIPALFEG-TVADNIRYG 429
            ++  L K        LKGV++EI KG ++G+IGPSG+GKSTL+R +NRL EP SG V+L+G ++  L    L   RR++GM+FQ  AL E  +V +N+  G
Sbjct:    3 KIENLTKRYKGDEIALKGVSLEIKKGQVVGLIGPSGAGKSTLIRCINRLIEPSSGEVWLEGVNLPSLSRTKLKEARREMGMIFQEYALIERLSVMENVLSG 103          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_ASPFU (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus fumigatus GN=atm1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 46/115 (40.00%), Postives = 66/115 (57.39%), Query Frame = 1
Query:  145 GELRKES-----DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYK 474
            GE+R E+         PILK  +  IP G    I+GPSG GKST+LR L R ++   G + +D +D+ D+ + SLR+ +G++ Q   LF  T+A NIRYG        T+ EV+K
Sbjct:  454 GEIRFENVTFGYHPDRPILKNASFTIPAGQKFAIVGPSGCGKSTILRLLFRFYDVQEGRILIDDQDVRDVSLESLRKAIGVVPQDTPLFNDTIAHNIRYG----RIDATDEEVHK 564          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_SYNAS3.392e-1539.33Lipid A export ATP-binding/permease protein msbA O... [more]
MDR_ORYSJ3.392e-1534.75Putative multidrug resistance protein OS=Oryza sat... [more]
MDR3_HUMAN3.392e-1541.84Multidrug resistance protein 3 OS=Homo sapiens GN=... [more]
ABCB7_MOUSE3.392e-1543.68ATP-binding cassette sub-family B member 7, mitoch... [more]
AB22B_ARATH3.392e-1541.67ABC transporter B family member 22 OS=Arabidopsis ... [more]
PSTB_METMA4.429e-1543.62Phosphate import ATP-binding protein pstB OS=Metha... [more]
PSTB_BORBU4.429e-1545.83Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB2_CHRSD4.429e-1541.38Phosphate import ATP-binding protein pstB 2 OS=Chr... [more]
PHNC_WOLSU4.429e-1545.54Phosphonates import ATP-binding protein phnC OS=Wo... [more]
ATM1_ASPFU4.429e-1540.00Iron-sulfur clusters transporter atm1, mitochondri... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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