FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCBB_HUMAN (Bile salt export pump OS=Homo sapiens GN=ABCB11 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.429e-15
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            IL  +NM I  G +  ++GPSG+GKST L+ + R ++P  G V +DG DI  L++  LR ++G++ Q P LF  T+A+NIRYG
Sbjct:  437 ILNDLNMVIKPGEMTALVGPSGAGKSTALQLIQRFYDPCEGMVTVDGHDIRSLNIQWLRDQIGIVEQEPVLFSTTIAENIRYG 519          

HSP 2 Score: 71.633 bits (174), Expect = 2.058e-12
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   67 REHLLTVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            R+  ++V   A  + DN   K  F   +    S   + +L G+++ I  G  +  +G SG GKST ++ L R ++P  G V +DG D   ++V  LR  +G++ Q P LF  ++ DNI+YG
Sbjct: 1057 RQPPISVYNTAGEKWDNFQGKIDFVDCKFTYPSRPDSQVLNGLSVSISPGQTLAFVGSSGCGKSTSIQLLERFYDPDQGKVMIDGHDSKKVNVQFLRSNIGIVSQEPVLFACSIMDNIKYG 1177          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MDR65_DROME (Multidrug resistance protein homolog 65 OS=Drosophila melanogaster GN=Mdr65 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 43/120 (35.83%), Postives = 71/120 (59.17%), Query Frame = 1
Query:  103 AEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDIT-DLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE 459
            A+  N  +  ++R  + R  +   A IL G+++E+ KG  + ++G SG GKST ++ L R ++P  GT+ +D  DI  DL +  +R K+G++ Q P LFE ++A+NI YG   R   + E
Sbjct: 1050 AKQLNLFEGVRYRGIQFRYPTRPDAKILNGLDLEVLKGQTVALVGHSGCGKSTCVQLLQRYYDPDEGTIHIDHDDIQHDLTLDGVRTKLGIVSQEPTLFERSIAENIAYGDNRRSVSMVE 1169          

HSP 2 Score: 68.5514 bits (166), Expect = 1.742e-11
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1
Query:  187 KGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +G+N+ I  G  + ++G SG GKST ++ L R ++P  G+V LD  DI   ++  LR  + ++ Q P LF GT+A NI YG
Sbjct:  424 RGLNIRIRAGQTVALVGSSGCGKSTCVQLLQRFYDPVFGSVLLDDLDIRKYNIQWLRSNIAVVGQEPVLFLGTIAQNISYG 504          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_CANAL (Iron-sulfur clusters transporter ATM1, mitochondrial OS=Candida albicans GN=ATM1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 43/118 (36.44%), Postives = 71/118 (60.17%), Query Frame = 1
Query:  145 GELRKES-----DDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLLS 483
            GE+R E+         PIL   +  IP G  + I+GPSGSGKST+LR + R ++   G + +DG+DI+ + + SLR+ +G++ Q   LF  T+ +NIRYG        ++ E+Y++++
Sbjct:  464 GEIRFENVSFGYHPDRPILNNASFTIPAGQKVAIVGPSGSGKSTILRLIFRFYDINQGRILIDGQDISKVSLESLRKLIGIVPQETPLFNDTILENIRYG----RLDASDEEIYRVIN 577          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ABCB6_HUMAN (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.785e-15
Identity = 42/114 (36.84%), Postives = 64/114 (56.14%), Query Frame = 1
Query:  118 QIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTE 459
            + QK +     +     DG   L+ V+  +  G  + ++GPSG+GKST+LR L R ++  SG + +DG+DI+ +   SLR  +G++ Q   LF  T+ADNIRYG    G    E
Sbjct:  584 RFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVE 697          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN_RHILO (Methionine import ATP-binding protein metN OS=Rhizobium loti GN=metN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 44/98 (44.90%), Postives = 63/98 (64.29%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDL---DVLSLRRKVGMLFQ-IPALFEGTVADNIRYGPQLRGKKLTE 459
            P + G+++ + KG I+GIIG SG+GKSTL+R LN L  P SG VF++GR+I  L   D+  LRR++GM+FQ    L   TV DN+    ++ G+   E
Sbjct:   39 PAIDGISLTVRKGEILGIIGRSGAGKSTLIRCLNGLERPDSGEVFIEGREIGRLGERDLQPLRRRIGMIFQHFNLLSAKTVEDNVALPLKIEGRPKAE 136          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: ATM1_ASPOR (Iron-sulfur clusters transporter atm1, mitochondrial OS=Aspergillus oryzae GN=atm1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 1
Query:  178 PILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            PILK  +  IP G    I+GPSG GKST+LR L R ++   G + +DG+D+ D+ + SLR+ +G++ Q   LF  ++A NIRYG
Sbjct:  466 PILKNASFTIPAGQKFAIVGPSGCGKSTILRLLFRYYDVQEGRILVDGQDVRDVTLESLRKAIGVVPQDTPLFNDSIAHNIRYG 549          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB19B_ARATH (ABC transporter B family member 19 OS=Arabidopsis thaliana GN=ABCB19 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.556e-15
Identity = 46/128 (35.94%), Postives = 73/128 (57.03%), Query Frame = 1
Query:   88 PGEAEAEDDNQIQKP-KFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEV 468
            P +A+A+    I+   +FR  +    S     + +  N+ I  G    ++G SGSGKS+++  + R ++P +G V +DG+DI  L++ SLR K+G++ Q PALF  T+ DNI YG        TE+EV
Sbjct:  995 PDDADADPVETIRGDIEFRHVDFAYPSRPDVMVFRDFNLRIRAGHSQALVGASGSGKSSVIAMIERFYDPLAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAATIFDNIAYGKD----GATESEV 1118          

HSP 2 Score: 73.559 bits (179), Expect = 5.415e-13
Identity = 34/83 (40.96%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  181 ILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            I +  N+  P G  + ++G SGSGKST++  + R ++P SG + LDG +I  L +  LR ++G++ Q PALF  T+ +NI YG
Sbjct:  382 IFRNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQIGLVNQEPALFATTILENILYG 464          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: YFIC_BACSU (Uncharacterized ABC transporter ATP-binding protein yfiC OS=Bacillus subtilis GN=yfiC PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 43/126 (34.13%), Postives = 65/126 (51.59%), Query Frame = 1
Query:   70 EHLLTVPGEAEAEDDNQ------IQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            E +  V  E E  +D +      IQ       ++    D G   LK +   +P G  +  +GP+G+GK+T+   L R +EP  G + +DG DI  L   SLR+ +G + Q   LF+GT+ +NIRYG
Sbjct:  338 ERVFDVLDEKEEREDEKNAVHQPIQTGSIEFRDVSFGYDKGQQTLKHLQFTVPAGQSIAFVGPTGAGKTTVTNLLARFYEPNDGKILIDGTDIKTLTRASLRKNMGFVLQDSFLFQGTIRENIRYG 463          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_HALWD (Phosphate import ATP-binding protein pstB OS=Haloquadratum walsbyi (strain DSM 16790) GN=pstB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   55 RDEVREHLLTVPGEAEAEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPS-----GTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            R+E RE+   VP +   +D +                DD A  L+GV+MEIP+  +  +IGPSG GKST LR LNR+ +  S     G+V LD ++I    ++++ LR++VGM+FQ P  F  ++ +NI YGP+  G
Sbjct:   34 REEWREYSFDVPTKLGVDDLDVYY------------GDDQA--LEGVSMEIPEKSVTALIGPSGCGKSTFLRCLNRMNDRVSSARIDGSVTLDSQEIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENIAYGPEKHG 156          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MSBA_RALSO (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia solanacearum GN=msbA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  103 AEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            A  D + +   FR G       DG   L  +++ +  G I+ ++GPSGSGK+TL+  L R +EP SG + LDG  + DL +  LRR++  + Q   LF  T+A N+ YG
Sbjct:  345 ARGDLRFEHVTFRYGP------DGRAALDSIDLHVKAGEIVALVGPSGSGKTTLVNLLPRFFEPTSGRIVLDGDALADLSLQDLRRQIAFVSQDVVLFNDTIAANVAYG 447          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCBB_HUMAN4.429e-1545.78Bile salt export pump OS=Homo sapiens GN=ABCB11 PE... [more]
MDR65_DROME5.785e-1535.83Multidrug resistance protein homolog 65 OS=Drosoph... [more]
ATM1_CANAL5.785e-1536.44Iron-sulfur clusters transporter ATM1, mitochondri... [more]
ABCB6_HUMAN5.785e-1536.84ATP-binding cassette sub-family B member 6, mitoch... [more]
METN_RHILO7.556e-1544.90Methionine import ATP-binding protein metN OS=Rhiz... [more]
ATM1_ASPOR7.556e-1545.24Iron-sulfur clusters transporter atm1, mitochondri... [more]
AB19B_ARATH7.556e-1535.94ABC transporter B family member 19 OS=Arabidopsis ... [more]
YFIC_BACSU9.868e-1534.13Uncharacterized ABC transporter ATP-binding protei... [more]
PSTB_HALWD9.868e-1537.96Phosphate import ATP-binding protein pstB OS=Haloq... [more]
MSBA_RALSO9.868e-1537.61Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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