FC932291

Overview
NameFC932291
Unique NameFC932291
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length487
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MSBA_CHRSD (Lipid A export ATP-binding/permease protein msbA OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=msbA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 40/99 (40.40%), Postives = 62/99 (62.63%), Query Frame = 1
Query:  133 KFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            +FR GE      D A +LKG+++++P+G ++ I+G SGSGKSTL+  + R + P  G V LD  DI +  +  LR+++ ++ Q   LF  T+A NI YG
Sbjct:  344 RFRYGE------DQAEVLKGIDLDVPQGEMIAIVGRSGSGKSTLVSLMPRFYRPTEGRVLLDDVDIQEYALSPLRQRIALVSQQVTLFNTTIAANIAYG 436          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN_CAUCR (Methionine import ATP-binding protein metN OS=Caulobacter crescentus GN=metN PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 44/100 (44.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  172 GAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVL---SLRRKVGMLFQIPALFEG-TVADNIRYGPQLRGKKLTE 459
            G P L GV++ +  G + G+IG SG+GKSTL+R +N L  P +G V +DG D+  L V    +LRR+VGM+FQ   L  G TVA N+ +  +L G+   E
Sbjct:   15 GHPALSGVSLSVKAGEVFGVIGASGAGKSTLIRLINGLETPSAGQVIVDGDDVAALGVAGLRALRRRVGMIFQHFNLLSGKTVAQNVAFPLKLAGRPAAE 114          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: METN1_PSEAB (Methionine import ATP-binding protein metN 1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=metN1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 51/131 (38.93%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  112 DNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLD---VLSLRRKVGMLFQIPALFEG-TVADNIRYGPQLRG--KKLTENEVYKLLSL 486
            D +   P  R+  L K    G   L+ +++EI +G + GIIG SG+GKS+L+R LNRL  P  G V +DG DI   D   +++LRR++GM+FQ   L    TV  NI    ++ G  +   E  V  LL L
Sbjct:   21 DTRASTPHIRLHGLGKRYPGGVQALREIDLEIRRGEVFGIIGRSGAGKSSLIRTLNRLERPSEGQVLIDGEDIGGYDGQRLVALRRRIGMIFQHFNLMSAKTVRQNIALPLRVAGVPRARIEERVAGLLQL 151          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: AB26B_ARATH (ABC transporter B family member 26, chloroplastic OS=Arabidopsis thaliana GN=ABCB26 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.868e-15
Identity = 38/89 (42.70%), Postives = 59/89 (66.29%), Query Frame = 1
Query:  163 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            S D   +++ VN+ +  G ++ I+G SGSGKSTL+  L +L+EP SG + LDG  + +LDV  LR+++G + Q P LF   ++ NI+YG
Sbjct:  466 SRDEVAVVQNVNISVHPGEVVAIVGLSGSGKSTLVNLLLQLYEPTSGQILLDGVPLKELDVKWLRQRIGYVGQEPKLFRTDISSNIKYG 554          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_SACD2 (Phosphate import ATP-binding protein pstB OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=pstB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 42/91 (46.15%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  193 VNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEP-----PSGTVFLDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRG 444
            V+++I K  ++ +IGPSG GKST LR LNR+ +       SG++ LDG DI D  LDV+ LR +VGM+FQ P  F  ++ +N+ YGP++ G
Sbjct:   64 VDLDIAKNQVIAMIGPSGCGKSTFLRCLNRMNDTIDICRVSGSITLDGMDIYDKQLDVVPLRARVGMVFQKPNPFPKSIYENVAYGPKIHG 154          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_MARMM (Phosphate import ATP-binding protein pstB OS=Maricaulis maris (strain MCS10) GN=pstB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  163 SDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVF-----LDGRDITD--LDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKKLTENEVYKLL 480
            S  G   L  V+++IP   +   IGPSG GKST LR LNR+ +   G V      +DG++I D  +D + LR  VGM+FQ P  F  ++ DN+ YGP++ G  LT  E+ +++
Sbjct:   24 SYSGKQALHDVSIDIPDRSVTAFIGPSGCGKSTFLRCLNRMNDTIDGAVVGGSLTIDGQEINDKTIDPVVLRASVGMVFQKPNPFPKSIYDNVAYGPRIHGLALTRPELDEIV 136          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BORGA (Phosphate import ATP-binding protein pstB OS=Borrelia garinii GN=pstB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            L  +N++I K  I  +IGPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G K
Sbjct:   29 LNEINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTK 124          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB_BORAP (Phosphate import ATP-binding protein pstB OS=Borrelia afzelii (strain PKo) GN=pstB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWE-----PPSGTVFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            L  +N++I K  I  +IGPSG GKST LR LNR+ +        G V  +G++I   + D+L LRRK+GM+FQ P  F  ++ DNI YGP++ G K
Sbjct:   29 LNEINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTK 124          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: PSTB1_VIBCH (Phosphate import ATP-binding protein pstB 1 OS=Vibrio cholerae GN=pstB1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query:  184 LKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGT-----VFLDGRDI--TDLDVLSLRRKVGMLFQIPALFEGTVADNIRYGPQLRGKK 450
            L  ++M IPKG +   IGPSG GKSTLLR +NR+ +   GT     V L G++I   D+DV +LRR+VGM+FQ P  F  ++ +N+ YG +L+G K
Sbjct:   42 LSDISMRIPKGQVTAFIGPSGCGKSTLLRCINRMNDLVEGTRVEGEVKLHGKNIYHPDVDVPTLRRRVGMVFQRPNPFPKSIYENVVYGLRLQGIK 137          
BLAST of FC932291 vs. ExPASy Swiss-Prot
Match: MSBA_RALEJ (Lipid A export ATP-binding/permease protein msbA OS=Ralstonia eutropha (strain JMP134) GN=msbA PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.289e-14
Identity = 39/109 (35.78%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  103 AEDDNQIQKPKFRVGELRKESDDGAPILKGVNMEIPKGVIMGIIGPSGSGKSTLLRALNRLWEPPSGTVFLDGRDITDLDVLSLRRKVGMLFQIPALFEGTVADNIRYG 429
            A+ D   ++  FR GE  +      P L+G+++ +P G ++ ++GPSGSGK+TL+  + R ++P  G + LDG  I D+ +  LR ++  + Q   LF  TVA N+ YG
Sbjct:  343 AKGDLVFERVGFRYGEGTR------PALEGIDIRVPAGEVVALVGPSGSGKTTLVNLVPRFFDPTDGRILLDGHAIGDIALRELRNQIAFVSQDVVLFNDTVAANVAYG 445          
The following BLAST results are available for this feature:
BLAST of FC932291 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
MSBA_CHRSD9.868e-1540.40Lipid A export ATP-binding/permease protein msbA O... [more]
METN_CAUCR9.868e-1544.00Methionine import ATP-binding protein metN OS=Caul... [more]
METN1_PSEAB9.868e-1538.93Methionine import ATP-binding protein metN 1 OS=Ps... [more]
AB26B_ARATH9.868e-1542.70ABC transporter B family member 26, chloroplastic ... [more]
PSTB_SACD21.289e-1446.15Phosphate import ATP-binding protein pstB OS=Sacch... [more]
PSTB_MARMM1.289e-1439.82Phosphate import ATP-binding protein pstB OS=Maric... [more]
PSTB_BORGA1.289e-1444.79Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB_BORAP1.289e-1444.79Phosphate import ATP-binding protein pstB OS=Borre... [more]
PSTB1_VIBCH1.289e-1446.88Phosphate import ATP-binding protein pstB 1 OS=Vib... [more]
MSBA_RALEJ1.289e-1435.78Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionC34207A07EF PostHarveN Citrus clementina cDNA clone C34207A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932291 ID=FC932291; Name=FC932291; organism=Citrus clementina; type=EST; length=487bp
GGCGTTTCTCAGATTGAAGTAATACAGAAAATGCCTTCAACTTGTTCACT
CTTTCGAGATGAAGTTCGTGAGCATCTATTGACGGTGCCGGGAGAAGCTG
AAGCTGAAGATGATAATCAAATTCAGAAACCGAAGTTTCGGGTAGGGGAG
TTGAGAAAAGAATCGGATGATGGGGCTCCGATACTGAAGGGGGTCAATAT
GGAGATACCAAAGGGGGTGATCATGGGGATCATTGGGCCCAGTGGAAGCG
GCAAATCAACCCTGTTGAGGGCGCTGAACCGTCTGTGGGAACCACCCTCT
GGTACGGTGTTCTTGGACGGCCGCGATATTACTGATCTCGACGTTCTCTC
TCTTCGTCGTAAAGTTGGCATGCTCTTCCAGATTCCGGCTCTCTTCGAAG
GCACAGTTGCTGATAATATTCGATATGGACCACAATTGAGGGGAAAGAAA
TTAACCGAGAATGAGGTTTACAAGTTGCTCTCACTTG
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