FC932292

Overview
NameFC932292
Unique NameFC932292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15482 contig Ccv1_Contig15482:14..690. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.876e-42
Identity = 85/180 (47.22%), Postives = 125/180 (69.44%), Query Frame = 1
Query:  139 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            +IG+ G+AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  +AY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 181          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CUNEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Cunninghamella elegans GN=6-PGD PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.063e-42
Identity = 89/183 (48.63%), Postives = 125/183 (68.31%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            A++ IGL GLAVMGQNL LN+ + GF +  YNRTTSKVD+ L  A+      + G ++  +    ++RPR V++LVKAGS VD  I  L  H+  GD IIDGGN  + ++ RR  E   +G+L++G GVSGGEEGAR+GPSLMPGG+ +A+ +I+ I Q +AA+  DG  C  ++GE G+G++
Sbjct:    4 AVADIGLIGLAVMGQNLILNMNDHGFVVCAYNRTTSKVDDFL--ANEAKGTNVVGAHSVEELCAKLKRPRKVMLLVKAGSAVDAFIDQLLPHLEEGDIIIDGGNSHFPDSIRRTKELEAKGILFVGSGVSGGEEGARYGPSLMPGGNSKAWEHIQPIFQAIAAKAPDGASCCEWVGETGAGHY 184          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_BACSU (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus subtilis GN=gntZ PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.924e-41
Identity = 85/178 (47.75%), Postives = 116/178 (65.17%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ + +   +GQ  L+ +Y   DFV S+++PR + ++V AG PVD  I +L   +  GD I+DGGN  Y +TERR  E  ++G+ YLG+G+SGGE GA  GPS+MPGG  + Y     IL K+AAQV D PC  YIG  G+G+F
Sbjct:    5 IGVIGLGVMGSNIALNMANKGENVAVYNYTRDLTDQLIQKL--DGQ-SLSPYYELEDFVQSLEKPRKIFLMVTAGKPVDSVIQSLKPLLEEGDVIMDGGNSHYEDTERRYDELKEKGIGYLGVGISGGEVGALTGPSIMPGGDRDVYEKAAPILTKIAAQVGDDPCCVYIGPKGAGHF 179          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CAEEL (6-phosphogluconate dehydrogenase, decarboxylating OS=Caenorhabditis elegans GN=T25B9.9 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.597e-41
Identity = 81/178 (45.51%), Postives = 121/178 (67.98%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            I + GLAVMGQNL LN+ + GF +  +NRT   VD+ L  A+      + G ++  +    ++RPR V++L+KAG+PVD  I A+  H+  GD IIDGGN  Y ++ RR  + + +G++++G GVSGGEEGAR GPSLMPGG+ +A+ +++DI QK+AA+ +  PC  ++G  GSG+F
Sbjct:    6 IAVIGLAVMGQNLILNMNDHGFTVCAFNRTVKLVDDFL--ANEAKGTKIIGAHSIEEMCKKLKRPRRVMMLIKAGTPVDMMIDAIVPHLEEGDIIIDGGNSEYTDSNRRSEQLAAKGIMFVGCGVSGGEEGARFGPSLMPGGNPKAWPHLKDIFQKIAAKSNGEPCCDWVGNAGSGHF 181          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_BUCAP (6-phosphogluconate dehydrogenase, decarboxylating OS=Buchnera aphidicola subsp. Schizaphis graminum GN=gnd PE=3 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.597e-41
Identity = 75/179 (41.90%), Postives = 130/179 (72.63%), Query Frame = 1
Query:  139 RIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            ++G+ G+AVMG+NLALN+  K + +S++NRT S  +E ++    +   P   +++ +DFV S+++PR ++++VK+G P D+TI  +  +++ GD +IDGGN +Y ++ RR ++  + G+ ++GMGVSGGE GA +GPS+MPGGS EAY+ +  +L+K++A+  + PCV+YIG  G+G++
Sbjct:    5 QVGVIGMAVMGRNLALNIESKKYTVSIFNRTQSVTEEVINNNKEKKIFP---YFSIKDFVNSLRKPRCILLMVKSGQPTDETIQFILPYLNKGDILIDGGNTFYKDSIRRSNDLMKCGINFIGMGVSGGELGALNGPSIMPGGSREAYDLVSSMLKKISAKFKNEPCVSYIGPNGAGHY 180          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_MOUSE (6-phosphogluconate dehydrogenase, decarboxylating OS=Mus musculus GN=Pgd PE=2 SV=3)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 89/183 (48.63%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            A + I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ L  A+      + G  + +D V  +++PR VI+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G+F
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKAIFQAIAAKVGTGEPCCDWVGDEGAGHF 182          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPL (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Klebsiella planticola GN=gnd PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.548e-41
Identity = 82/173 (47.40%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  HYT ++FV S++ PR ++++VKAG+  D  I +L  +++ GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL+++AA+ +DG PCV YIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPHYTVKEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLNKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEQIAARAEDGEPCVAYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_RAT (6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.127e-40
Identity = 88/183 (48.09%), Postives = 123/183 (67.21%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            A + I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ L +  +  ++   G  + +D V  +++PR VI+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G+F
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAKEAKGTKV--IGAKSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCQDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQAIAAKVGTGEPCCDWVGDEGAGHF 182          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_KLETE (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Klebsiella terrigena GN=gnd PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.127e-40
Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  HYT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S  G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL+++AA+ +DG PCV YIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPHYTVKEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSADGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILEQIAARAEDGEPCVAYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CITAM (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter amalonaticus GN=gnd PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.778e-40
Identity = 82/173 (47.40%), Postives = 121/173 (69.94%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S++G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL+++AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVQEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAGHY 170          
The following BLAST results are available for this feature:
BLAST of FC932292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SALTY3.876e-4247.226-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CUNEL5.063e-4248.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACSU1.924e-4147.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CAEEL5.597e-4145.516-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BUCAP5.597e-4141.906-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_MOUSE9.548e-4148.636-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPL9.548e-4147.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_RAT2.127e-4048.096-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLETE2.127e-4047.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITAM2.778e-4047.406-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34207A08EF PostHarveN Citrus clementina cDNA clone C34207A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932292 ID=FC932292; Name=FC932292; organism=Citrus clementina; type=EST; length=677bp
GGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGTATAAATTAATTTA
AAAAACAAATAAATATATATCTCCTCCGCCCCAAATACTCACCATTTCTC
TTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTCACGCATCGGTCTT
GCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAAACGTCGCTGAAAA
AGGCTTCCCAATCTCCGTCTACAACCGCACTACTTCCAAAGTCGACGAAA
CCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTTGACCGGCCACTAC
ACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCAGATCCGTCATCAT
CTTAGTCAAAGCCGGCTCCCCCGTTGACCAGACCATCGCCGCCCTCTCGG
AGCACATGTCCCCCGGCGACTGCATCATCGACGGCGGCAACGAGTGGTAC
CTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGCAGGGTTTGCTTTA
TCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCGCGTCATGGTCCCT
CTTTGATGCCCGGTGGCTCCTTTGAGGCTTATAATAATATTCGAGATATT
TTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTTGTGTTACTTACAT
TGGTGAAGGCGGGTCTGGTAATTTCGT
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