FC932292

Overview
NameFC932292
Unique NameFC932292
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_HUMAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3)

HSP 1 Score: 164.851 bits (416), Expect = 3.628e-40
Identity = 87/183 (47.54%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            A + I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ L  A+      + G  + ++ V  +++PR +I+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G+F
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAGHF 182          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CITDI (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter diversus GN=gnd PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.628e-40
Identity = 83/173 (47.98%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SHISO (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella sonnei GN=gnd PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +S++NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIDY (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella dysenteriae GN=gnd PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +S++NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIBO (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella boydii GN=gnd PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.738e-40
Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +S++NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_SHEEP (6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4)

HSP 1 Score: 162.925 bits (411), Expect = 1.379e-39
Identity = 86/183 (46.99%), Postives = 122/183 (66.67%), Query Frame = 1
Query:  130 ALSRIGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            A + I L GLAVMGQNL LN+ + GF +  +NRT SKVD+ L  A+      + G ++  + V  +++PR +I+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G+F
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAGHF 182          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_DICDI (6-phosphogluconate dehydrogenase, decarboxylating OS=Dictyostelium discoideum GN=gnd PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.801e-39
Identity = 84/180 (46.67%), Postives = 123/180 (68.33%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG--PCVTYIGEGGSGNF 675
            IGL GLAVMG+NL LN+  +GF  SVYNRTTSKVDE + +   +G+    G ++    V S++ PR V+++VKAG  VD  I  L   +  GD IIDGGN  Y +++RR  +   +G+L++G GVSGGEEGA  GPS+MPGG+ +A+ +++ I Q ++A+V  G  PC  ++G+GG+G++
Sbjct:    8 IGLIGLAVMGENLVLNMESRGFTCSVYNRTTSKVDEFV-QGRGKGK-KFIGCHSLETLVQSLKTPRRVMLMVKAGEVVDHFIQLLLPLLEKGDIIIDGGNSLYTDSDRRTKDLDAKGILFIGTGVSGGEEGALLGPSIMPGGNPKAWEHVKPIFQAISAKVQPGDQPCCDWVGDGGAGHY 185          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_ESCVU (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Escherichia vulneris GN=gnd PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.352e-39
Identity = 82/173 (47.40%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +SV+NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++V+AG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVV--AENPGK-KLVPYYTVQEFVESLETPRRILLMVQAGAGTDAAINSLKPYLDKGDIIIDGGNTFFHDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAGHY 170          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_BACLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Bacillus licheniformis GN=gntZ PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.352e-39
Identity = 81/178 (45.51%), Postives = 111/178 (62.36%), Query Frame = 1
Query:  142 IGLAGLAVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSGNF 675
            IG+ GL VMG N+ALN+A KG  ++VYN T    D+ + +   +   P   +Y   DFV S+++PR + ++V AG PVD  I +L   +  GD I+DGGN  Y +TERR      +G+ YLG+G+SGGE GA  GPS+MPGG  + Y     IL K+AAQV+  PC  YIG  G+G+F
Sbjct:    5 IGVIGLGVMGSNIALNMASKGEQVAVYNYTRDLTDQLVQKTGGQTVKP---YYELEDFVQSLEKPRKIFLMVTAGKPVDSVIDSLVPLLEEGDVIMDGGNSHYEDTERRYDSLKAKGIGYLGIGISGGEVGALKGPSIMPGGDRDVYEKAAPILTKIAAQVEGDPCCVYIGPKGAGHF 179          
BLAST of FC932292 vs. ExPASy Swiss-Prot
Match: 6PGD_CITFR (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter freundii GN=gnd PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.071e-39
Identity = 81/173 (46.82%), Postives = 118/173 (68.21%), Query Frame = 1
Query:  160 AVMGQNLALNVAEKGFPISVYNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSGNF 675
            AVMG+NLALN+  +G+ +S++NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCV YIG  G+G++
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVV--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVIYIGADGAGHY 170          
The following BLAST results are available for this feature:
BLAST of FC932292 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_HUMAN3.628e-4047.546-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITDI3.628e-4047.986-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHISO4.738e-4047.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIDY4.738e-4047.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIBO4.738e-4047.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHEEP1.379e-3946.996-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DICDI1.801e-3946.676-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ESCVU2.352e-3947.406-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_BACLI2.352e-3945.516-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITFR3.071e-3946.826-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34207A08EF PostHarveN Citrus clementina cDNA clone C34207A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932292 ID=FC932292; Name=FC932292; organism=Citrus clementina; type=EST; length=677bp
GGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGTATAAATTAATTTA
AAAAACAAATAAATATATATCTCCTCCGCCCCAAATACTCACCATTTCTC
TTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTCACGCATCGGTCTT
GCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAAACGTCGCTGAAAA
AGGCTTCCCAATCTCCGTCTACAACCGCACTACTTCCAAAGTCGACGAAA
CCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTTGACCGGCCACTAC
ACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCAGATCCGTCATCAT
CTTAGTCAAAGCCGGCTCCCCCGTTGACCAGACCATCGCCGCCCTCTCGG
AGCACATGTCCCCCGGCGACTGCATCATCGACGGCGGCAACGAGTGGTAC
CTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGCAGGGTTTGCTTTA
TCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCGCGTCATGGTCCCT
CTTTGATGCCCGGTGGCTCCTTTGAGGCTTATAATAATATTCGAGATATT
TTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTTGTGTTACTTACAT
TGGTGAAGGCGGGTCTGGTAATTTCGT
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