FC932295

Overview
NameFC932295
Unique NameFC932295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICPR (NADH-quinone oxidoreductase subunit B OS=Rickettsia prowazekii GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 111/132 (84.09%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F++SK+D+V+++ R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   21 FLLSKVDEVISWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICFE (NADH-quinone oxidoreductase subunit B OS=Rickettsia felis GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICCN (NADH-quinone oxidoreductase subunit B OS=Rickettsia conorii GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICCK (NADH-quinone oxidoreductase subunit B OS=Rickettsia canadensis (strain McKiel) GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVDIY+PGCPPTAEAL+YG
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDIYIPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICB8 (NADH-quinone oxidoreductase subunit B OS=Rickettsia bellii (strain OSU 85-389) GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   21 FLLTKVDDVIGWARSNSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMAEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_RICAE (NADH-quinone oxidoreductase subunit B OS=Rickettsia africae (strain ESF-5) GN=nuoB PE=3 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.591e-52
Identity = 91/132 (68.94%), Postives = 110/132 (83.33%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+++K+DDV+ + R  S+WPM+FGLACCAVEMM   A+RYD+DRFG++FRPSPRQSD+M+VAGTLTNKMAPALRKVYDQM +P+WV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   21 FLLTKVDDVIGWARANSLWPMTFGLACCAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVLSMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYG 152          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_GRABC (NADH-quinone oxidoreductase subunit B OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.078e-52
Identity = 95/132 (71.97%), Postives = 108/132 (81.82%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV++ LD +VN+ R GS+WPM+FGLACCAVEM+H    RYDLDRFG+I R SPRQSDVM+VAGTLTNKMAPALR+VYDQMP+PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   46 FVVANLDKLVNWARTGSLWPMTFGLACCAVEMIHAYMPRYDLDRFGVIPRASPRQSDVMIVAGTLTNKMAPALRRVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 177          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_ACICJ (NADH-quinone oxidoreductase subunit B 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.544e-52
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV++ LD +VN+ R GS+WPM+FGLACCAVEM+H    R+DLDRFGII R SPRQSDVM+VAGTLTNKMAPALRKVYDQMP+PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   38 FVVANLDRLVNWARTGSLWPMTFGLACCAVEMIHAYMPRWDLDRFGIIPRNSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 169          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NDUS7_CAEEL (Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial OS=Caenorhabditis elegans GN=W10D5.2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.544e-52
Identity = 90/137 (65.69%), Postives = 112/137 (81.75%), Query Frame = 2
Query:  311 SKTAEFVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            S  AE+ +++LDDV+N  +RGSIWP++FGLACCAVEMMH  A RYD+DR+G++FR SPRQ+D++ VAGT+TNKMAPALR++YDQMP+ +WVISMGSCAN              CDR++PVDIYVPGCPPTAEALLYG
Sbjct:   43 SSKAEYALARLDDVLNLAQRGSIWPLTFGLACCAVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVISMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYG 179          
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_NEIG1 (NADH-quinone oxidoreductase subunit B OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=nuoB PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.629e-52
Identity = 91/132 (68.94%), Postives = 109/132 (82.58%), Query Frame = 2
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D V+N++R GS+WP++FGLACCAVEMMH G ARYDLDRFGIIFRPSPRQ+D+M+VAGTLTNKMAPALR+VYDQ+ +PRWV+SMGSCAN               DR+VPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FITTSADTVLNHMRTGSLWPVTFGLACCAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVLSMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYG 142          
The following BLAST results are available for this feature:
BLAST of FC932295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_RICPR1.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICFE1.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCN1.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICCK1.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICB81.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_RICAE1.591e-5268.94NADH-quinone oxidoreductase subunit B OS=Rickettsi... [more]
NUOB_GRABC2.078e-5271.97NADH-quinone oxidoreductase subunit B OS=Granuliba... [more]
NUOB1_ACICJ3.544e-5273.48NADH-quinone oxidoreductase subunit B 1 OS=Acidiph... [more]
NDUS7_CAEEL3.544e-5265.69Probable NADH dehydrogenase [ubiquinone] iron-sulf... [more]
NUOB_NEIG14.629e-5268.94NADH-quinone oxidoreductase subunit B OS=Neisseria... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207A11EF PostHarveN Citrus clementina cDNA clone C34207A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932295 ID=FC932295; Name=FC932295; organism=Citrus clementina; type=EST; length=723bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTGCCCCCGTGTG
AGAAAACTAAACCAAACCCCACCCCCCCACCCCACCCCACAACCCCCAAA
ACACAAGCCCAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTCCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACT
GCTGAGGCCCTACTCTATGGAAT
back to top