FC932295

Overview
NameFC932295
Unique NameFC932295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP6 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 668) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP1 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1710b) GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURP0 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia pseudomallei (strain 1106a) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMS (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain SAVP1) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURMA (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei GN=nuoB1 PE=3 SV=2)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM9 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10229) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_BURM7 (NADH-quinone oxidoreductase subunit B 1 OS=Burkholderia mallei (strain NCTC 10247) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D ++N+ R GS+WPM+FGLACCAVEMMH GAARYDLDRFG++FRPSPRQSDVM+VAGTL NKMAPALR+VYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FVTTTADKLINWTRTGSLWPMTFGLACCAVEMMHAGAARYDLDRFGVVFRPSPRQSDVMIVAGTLCNKMAPALRRVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB1_AZOSB (NADH-quinone oxidoreductase subunit B 1 OS=Azoarcus sp. (strain BH72) GN=nuoB1 PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.787e-54
Identity = 96/132 (72.73%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV + LD V+N+ R GS+WPM+FGLACCAVEM+H G +RYDLDRFG++FRPSPRQSD+M+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG
Sbjct:   11 FVTTSLDAVINWTRTGSLWPMTFGLACCAVEMIHAGCSRYDLDRFGVVFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFT (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=nuoB PE=3 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 4.946e-54
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 168
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_XYLFM (NADH-quinone oxidoreductase subunit B OS=Xylella fastidiosa (strain M12) GN=nuoB PE=3 SV=1)

HSP 1 Score: 211.075 bits (536), Expect = 4.946e-54
Identity = 96/132 (72.73%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GAAR DLDR+GI+FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 168
The following BLAST results are available for this feature:
BLAST of FC932295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB1_BURP63.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP13.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURP03.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURMS3.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURMA3.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM93.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_BURM73.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Burkhol... [more]
NUOB1_AZOSB3.787e-5472.73NADH-quinone oxidoreductase subunit B 1 OS=Azoarcu... [more]
NUOB_XYLFT4.946e-5472.73NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]
NUOB_XYLFM4.946e-5472.73NADH-quinone oxidoreductase subunit B OS=Xylella f... [more]

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Properties
Property NameValue
Genbank descriptionC34207A11EF PostHarveN Citrus clementina cDNA clone C34207A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932295 ID=FC932295; Name=FC932295; organism=Citrus clementina; type=EST; length=723bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTGCCCCCGTGTG
AGAAAACTAAACCAAACCCCACCCCCCCACCCCACCCCACAACCCCCAAA
ACACAAGCCCAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTCCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACT
GCTGAGGCCCTACTCTATGGAAT
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