FC932295

Overview
NameFC932295
Unique NameFC932295
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length723
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_FRATM (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 141
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_FRATH (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain LVS) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 141
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_FRATF (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 141
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_FRAT1 (NADH-quinone oxidoreductase subunit B OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 141
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB2_NITOC (NADH-quinone oxidoreductase subunit B 2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=nuoB2 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.459e-54
Identity = 97/131 (74.05%), Postives = 108/131 (82.44%), Query Frame = 2 
Query:  329 VISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            V +  D ++N+ R GS+WPM+FGLACCAVEMMH GA+RYD+DRFG+IFRPSPRQSDVM+VAGTL NKMAPALRKVYDQM +PRWVISMGSCAN              CDRIVPVDIYVPGCPPTAEALLYG
Sbjct:   12 VTTTADKLINWARTGSLWPMTFGLACCAVEMMHAGASRYDMDRFGVIFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_POLNA (NADH-quinone oxidoreductase subunit B OS=Polaromonas naphthalenivorans (strain CJ2) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.436e-54
Identity = 96/132 (72.73%), Postives = 108/132 (81.82%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            FV +  D VVN+ + GS+WPM+FGLACCAVEMMH GAARYD+DRFG++FRPSPRQSD+M+VAGTL NKM PALRKVYDQM +PRWVISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG
Sbjct:   11 FVTTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAGAARYDIDRFGMLFRPSPRQSDLMIVAGTLCNKMGPALRKVYDQMAEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_NEOSM (NADH-quinone oxidoreductase subunit B OS=Neorickettsia sennetsu (strain Miyayama) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.436e-54
Identity = 95/132 (71.97%), Postives = 113/132 (85.61%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            ++++KLDD++N+ R GS+WPM+FGLACCAVEMMH  A+RYD+DRFG+IFRPSPRQSDVM+VAGTLTNKMAPALR+VYDQM +P++VISMGSCAN              CDRIVPVD+YVPGCPPTAEALLYG
Sbjct:   19 YLVAKLDDLINWARSGSLWPMTFGLACCAVEMMHFTASRYDMDRFGMIFRPSPRQSDVMIVAGTLTNKMAPALRRVYDQMAEPKYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALLYG 150
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_FRAP2 (NADH-quinone oxidoreductase subunit B OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=nuoB PE=3 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 8.436e-54
Identity = 94/132 (71.21%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D ++N++R GS+WP++ GLACCAVEMMH GAARYDLDRFGI+FRPSPRQSDV++VAGTL NKMAPALR+VYDQMPDP+WVISMGSCAN              CDRI+PVDIYVPGCPPTAEAL+YG
Sbjct:   10 FITASADALINWVRTGSLWPVTTGLACCAVEMMHAGAARYDLDRFGIVFRPSPRQSDVLIVAGTLCNKMAPALRQVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALVYG 141
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_BORPD (NADH-quinone oxidoreductase subunit B OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoB PE=3 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 8.436e-54
Identity = 95/132 (71.97%), Postives = 109/132 (82.58%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            F+ +  D  +N+ + GS+WPM+FGLACCAVEMMH GAARYDLD+FGIIFRPSPRQSD+M+VAGTL NKMAPALRKVYDQMP+PRWV+SMGSCAN              CDRIVPVD+YVPGCPPTAEAL+YG
Sbjct:   11 FITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMAPALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYG 142
[Close]
BLAST of FC932295 vs. ExPASy Swiss-Prot
Match: NUOB_XANOR (NADH-quinone oxidoreductase subunit B OS=Xanthomonas oryzae pv. oryzae GN=nuoB PE=3 SV=2)

HSP 1 Score: 209.92 bits (533), Expect = 1.102e-53
Identity = 95/132 (71.97%), Postives = 110/132 (83.33%), Query Frame = 2 
Query:  326 FVISKLDDVVNYIRRGSIWPMSFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDVMVVAGTLTNKMAPALRKVYDQMPDPRWVISMGSCANXXXXXXXXXXXXXXCDRIVPVDIYVPGCPPTAEALLYG 721
            +V + +D ++N+ R GS+WPM+FGLACCAVEMMH GA+R DLDR+G++FRPSPRQSDVM+VAGTL NKMAPALRKVYDQMPDP+WVISMGSCAN              CDRIVPVDIYVPGCPPTAEAL+YG
Sbjct:   37 YVTTSVDALLNWARTGSMWPMTFGLACCAVEMMHAGASRLDLDRYGVVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALVYG 168
The following BLAST results are available for this feature:
BLAST of FC932295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOB_FRATM6.459e-5471.97NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATH6.459e-5471.97NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRATF6.459e-5471.97NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_FRAT16.459e-5471.97NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB2_NITOC6.459e-5474.05NADH-quinone oxidoreductase subunit B 2 OS=Nitroso... [more]
NUOB_POLNA8.436e-5472.73NADH-quinone oxidoreductase subunit B OS=Polaromon... [more]
NUOB_NEOSM8.436e-5471.97NADH-quinone oxidoreductase subunit B OS=Neoricket... [more]
NUOB_FRAP28.436e-5471.21NADH-quinone oxidoreductase subunit B OS=Francisel... [more]
NUOB_BORPD8.436e-5471.97NADH-quinone oxidoreductase subunit B OS=Bordetell... [more]
NUOB_XANOR1.102e-5371.97NADH-quinone oxidoreductase subunit B OS=Xanthomon... [more]

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Properties
Property NameValue
Genbank descriptionC34207A11EF PostHarveN Citrus clementina cDNA clone C34207A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932295 ID=FC932295; Name=FC932295; organism=Citrus clementina; type=EST; length=723bp
GACTTTCAACCCCAACAACAATCAATTTCTCTCTCGCTTGCCCCCGTGTG
AGAAAACTAAACCAAACCCCACCCCCCCACCCCACCCCACAACCCCCAAA
ACACAAGCCCAAAAAAAAAAAAAAACTATGGCGGTACTCACCAAAAACAC
TGCCACGCGCCTCCCTCTCCTCCTCTCGCAACGCGCCGCCTGTCTCCACA
CGACCGTCCCCTCTCTCTCCTCGGCCTCCGGCTCCTCCTCCTCCTCCTCC
TCGCAGCCCACCTCCTACGCTCGCCCTCCACCGCCCTCGACCACAAGTCC
AGGCGGTATCTCAAAGACGGCGGAATTCGTGATCTCTAAATTGGATGATG
TCGTCAACTATATTCGTCGCGGCTCCATCTGGCCCATGTCCTTCGGGCTG
GCCTGCTGCGCCGTCGAGATGATGCACACCGGTGCTGCTCGTTACGATTT
AGATCGATTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCCGATGTCA
TGGTCGTAGCTGGCACACTCACAAACAAGATGGCCCCTGCCCTTCGCAAG
GTTTATGATCAAATGCCAGATCCTAGGTGGGTCATTTCTATGGGAAGCTG
TGCAAATGGTGGTGGATATTATCATTACTCTTACTCTGTTGTTCGGGGTT
GCGATAGGATTGTCCCCGTGGACATCTATGTTCCGGGCTGCCCTCCTACT
GCTGAGGCCCTACTCTATGGAAT
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