FC932301

Overview
NameFC932301
Unique NameFC932301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15482 contig Ccv1_Contig15482:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_AGGAC (6-phosphogluconate dehydrogenase, decarboxylating OS=Aggregatibacter actinomycetemcomitans GN=gnd PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 84/177 (47.46%), Postives = 121/177 (68.36%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            IG+ GLAVMGQNL LN+ + GF +   NRTTSKVDE L+ A +   +   G Y+  D    +++PR V+++V+AG  VD  I AL  H+  GD IIDGGN  Y +T RR+    ++G+ ++G GVSGGEEGARHGPS+MPGG+ EA+  ++ +LQ ++A+ + G PC  ++G+ G+G
Sbjct:    7 IGVIGLAVMGQNLILNMNDHGFKVVAYNRTTSKVDEFLEGAAKGTNI--IGAYSLEDLANKLEKPRKVMLMVRAGEVVDHFIDALLPHLEAGDIIIDGGNSNYPDTNRRVAALREKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWQFVKPVLQAISAKTEQGEPCCDWVGKDGAG 181          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD1_YEAST (6-phosphogluconate dehydrogenase, decarboxylating 1 OS=Saccharomyces cerevisiae GN=GND1 PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.096e-41
Identity = 86/175 (49.14%), Postives = 118/175 (67.43%), Query Frame = 2
Query:  158 GLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            GL GLAVMGQNL LN A+ GF +   NRT SKVD  L  A+      + G  +  DF+  ++RPR V++LVKAG+PVD  I  +   +  GD IIDGGN  + ++ RR  E  ++G+L++G GVSGGEEGAR+GPSLMPGGS EA+ +I++I Q ++A+ D  PC  ++G  G+G
Sbjct:    6 GLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFL--ANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGPSLMPGGSEEAWPHIKNIFQSISAKSDGEPCCEWVGPAGAG 178          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIFL (6-phosphogluconate dehydrogenase, decarboxylating OS=Shigella flexneri GN=gnd PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 85/178 (47.75%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ G+AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLAPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_ECOLI (6-phosphogluconate dehydrogenase, decarboxylating OS=Escherichia coli (strain K12) GN=gnd PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.737e-41
Identity = 85/178 (47.75%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ G+AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SCHPO (6-phosphogluconate dehydrogenase, decarboxylating OS=Schizosaccharomyces pombe GN=SPBC660.16 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 89/185 (48.11%), Postives = 124/185 (67.03%), Query Frame = 2
Query:  131 MEAPALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQV-DDGPCVTYIGEGGSG 682
            M    ++  GL GLAVMGQNL LN A+KGF +   NRTTS+VDE L  A+      + G ++  +FV  +++PR  I+LVKAG PVD  I  L+  +  GD I+DGGN  Y +T RR  E +++G+L++G GVSGGEEGAR+GPSLMPGG+  A+  I+ I Q +AA+  ++ PC  ++GE G+G
Sbjct:    1 MSQKEVADFGLIGLAVMGQNLILNGADKGFTVCCYNRTTSRVDEFL--ANEAKGKSIVGAHSLEEFVSKLKKPRVCILLVKAGKPVDYLIEGLAPLLEKGDIIVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYGPSLMPGGNPAAWPRIKPIFQTLAAKAGNNEPCCDWVGEQGAG 183          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_KLEPN (6-phosphogluconate dehydrogenase, decarboxylating OS=Klebsiella pneumoniae GN=gnd PE=3 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.574e-41
Identity = 85/178 (47.75%), Postives = 123/178 (69.10%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ G+AVMG+NLALN+  +G+ +SV NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL+++AA  +DG PCVTYIG  G+G
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENTGK-KLVPYYTVQEFVESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILKQIAAVAEDGEPCVTYIGADGAG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SALTY (6-phosphogluconate dehydrogenase, decarboxylating OS=Salmonella typhimurium GN=gnd PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.668e-41
Identity = 85/178 (47.75%), Postives = 122/178 (68.54%), Query Frame = 2
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ G+AVMG+NLALN+  +G+ +SV NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  +AY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    5 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 179          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_HAEDU (6-phosphogluconate dehydrogenase, decarboxylating OS=Haemophilus ducreyi GN=gnd PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.963e-41
Identity = 85/177 (48.02%), Postives = 119/177 (67.23%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVD-DGPCVTYIGEGGSG 682
            IG+ GLAVMGQNL LN+ + GF +   NRT SKVDE L  A       + G Y+  D    +++PR ++++V+AG  VDQ I AL  H+  GD IIDGGN  Y +T RR    +++G+ ++G GVSGGEEGARHGPS+MPGG+ EA+  ++ ILQ ++A+ D D PC  ++G+ G+G
Sbjct:    7 IGVIGLAVMGQNLILNMNDNGFKVVAYNRTASKVDEFL--AGEAKDTNIIGAYSLEDLAAKLEKPRKIMLMVRAGEVVDQFIDALLPHLEAGDIIIDGGNSNYPDTNRRTITLAEKGIRFIGTGVSGGEEGARHGPSIMPGGNEEAWPFVKPILQAISAKTDKDEPCCDWVGKEGAG 181          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_DROME (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila melanogaster GN=Pgd PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.358e-40
Identity = 90/176 (51.14%), Postives = 114/176 (64.77%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            I L GLAVMGQNL LN+ EKGF +   NRT +KV E L  A+      + G  +  D V  ++ PR V++LVKAGS VD  I  L   +S GD IIDGGN  Y +T RR  E ++ GLL++G GVSGGEEGARHGPSLMPGG   A+  I+ I Q + A+ D  PC  ++G+GG+G
Sbjct:    7 IALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFL--ANEAKDTKVIGADSLEDMVSKLKSPRKVMLLVKAGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRRCDELAKLGLLFVGSGVSGGEEGARHGPSLMPGGHEAAWPLIQPIFQAICAKADGEPCCEWVGDGGAG 180          
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_DROSI (6-phosphogluconate dehydrogenase, decarboxylating OS=Drosophila simulans GN=Pgd PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 90/176 (51.14%), Postives = 114/176 (64.77%), Query Frame = 2
Query:  155 IGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDGPCVTYIGEGGSG 682
            I L GLAVMGQNL LN+ EKGF +   NRT +KV E L  A+      + G  + +D V  ++ PR V++LVK GS VD  I  L   +S GD IIDGGN  Y +T RR  E ++ GLLY+G GVSGGEEGARHGPSLMPGG   A+  I+ I Q + A+ D  PC  ++G+GG+G
Sbjct:    7 IALIGLAVMGQNLILNMDEKGFVVCAYNRTVAKVKEFL--ANEAKGTNVIGADSLKDMVSKLKSPRKVMLLVKGGSAVDDFIQQLVPLLSAGDVIIDGGNSEYQDTSRRCDELAKLGLLYVGSGVSGGEEGARHGPSLMPGGHEAAWPLIQPIFQAICAKADGEPCCEWVGDGGAG 180          
The following BLAST results are available for this feature:
BLAST of FC932301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_AGGAC2.096e-4147.466-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD1_YEAST2.096e-4149.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIFL2.737e-4147.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ECOLI2.737e-4147.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SCHPO3.574e-4148.116-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_KLEPN3.574e-4147.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SALTY4.668e-4147.756-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HAEDU7.963e-4148.026-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROME1.358e-4051.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_DROSI1.774e-4051.146-phosphogluconate dehydrogenase, decarboxylating ... [more]

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Properties
Property NameValue
Genbank descriptionC34207B05EF PostHarveN Citrus clementina cDNA clone C34207B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932301 ID=FC932301; Name=FC932301; organism=Citrus clementina; type=EST; length=706bp
TTCGCTCCCTCGACGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGT
ATAAATTAATTTAAAAAACAAATAAATATATATCTCCTCCGCCCCAAATA
CTCACCATTTCTCTTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTC
ACGCATCGGTCTTGCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAA
ACGTCGCTGAAAAAGGCTTCCCAATCTCCGTCTGCAACCGCACTACTTCC
AAAGTCGACGAAACCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTT
GACCGGCCACTACACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCA
GATCCGTCATCATCTTAGTCAAAGCCGGCTCTCCCGTTGACCAGACCATC
GCCGCCCTCTCGGAGCACATGTCCCCCGGCGACTGCATCATCGACGGCGG
CAACGAGTGGTACCTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGC
AGGGTTTGCTTTATCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCG
CGTCATGGTCCCTCTTTGATGCCCGGTGGCTCCTTCGAGGCTTATAATAA
TATTCGAGATATTTTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTT
GTGTTACTTACATTGGTGAAGGCGGGTCTGGTATTTCGTTAAGATGGTCA
TACGGA
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