FC932301

Overview
NameFC932301
Unique NameFC932301
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length706
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15482 contig Ccv1_Contig15482:1..706. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SHISO (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella sonnei GN=gnd PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2 
Query:  173 AVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 168
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIDY (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella dysenteriae GN=gnd PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2 
Query:  173 AVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 168
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SHIBO (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Shigella boydii GN=gnd PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2 
Query:  173 AVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVI--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 168
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_RAT (6-phosphogluconate dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Pgd PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.707e-39
Identity = 87/181 (48.07%), Postives = 120/181 (66.30%), Query Frame = 2 
Query:  143 ALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            A + I L GLAVMGQNL LN+ + GF +   NRT SKVD+ L +  +  ++   G  + +D V  +++PR VI+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLAKEAKGTKV--IGAKSLKDMVSKLKKPRRVILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCQDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQAIAAKVGTGEPCCDWVGDEGAG 180
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_HUMAN (6-phosphogluconate dehydrogenase, decarboxylating OS=Homo sapiens GN=PGD PE=1 SV=3)

HSP 1 Score: 160.229 bits (404), Expect = 9.734e-39
Identity = 86/181 (47.51%), Postives = 119/181 (65.75%), Query Frame = 2 
Query:  143 ALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            A + I L GLAVMGQNL LN+ + GF +   NRT SKVD+ L  A+      + G  + ++ V  +++PR +I+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGEEGAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGPSLMPGGNKEAWPHIKTIFQGIAAKVGTGEPCCDWVGDEGAG 180
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_ESCVU (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Escherichia vulneris GN=gnd PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.832e-38
Identity = 82/171 (47.95%), Postives = 116/171 (67.84%), Query Frame = 2 
Query:  173 AVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            AVMG+NLALN+  +G+ +SV NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++V+AG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCVTYIG  G+G
Sbjct:    1 AVMGRNLALNIESRGYTVSVFNRSREKTEEVV--AENPGK-KLVPYYTVQEFVESLETPRRILLMVQAGAGTDAAINSLKPYLDKGDIIIDGGNTFFHDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVTYIGADGAG 168
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_SHEEP (6-phosphogluconate dehydrogenase, decarboxylating OS=Ovis aries GN=PGD PE=1 SV=4)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 85/181 (46.96%), Postives = 119/181 (65.75%), Query Frame = 2 
Query:  143 ALSRIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            A + I L GLAVMGQNL LN+ + GF +   NRT SKVD+ L  A+      + G ++  + V  +++PR +I+LVKAG  VD  I  L   +  GD IIDGGN  Y +T RR  +   +G+L++G GVSGGE+GAR+GPSLMPGG+ EA+ +I+ I Q +AA+V  G PC  ++G+ G+G
Sbjct:    2 AQADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFL--ANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGPSLMPGGNKEAWPHIKAIFQGIAAKVGTGEPCCDWVGDDGAG 180
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_CITFR (6-phosphogluconate dehydrogenase, decarboxylating (Fragment) OS=Citrobacter freundii GN=gnd PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.699e-38
Identity = 81/171 (47.37%), Postives = 115/171 (67.25%), Query Frame = 2 
Query:  173 AVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            AVMG+NLALN+  +G+ +S+ NR+  K +E +  A   G+  L  +YT ++FV S++ PR ++++VKAG+  D  I +L  ++  GD IIDGGN ++ +T RR  E S +G  ++G GVSGGEEGA  GPS+MPGG  EAY  +  IL K+AA  +DG PCV YIG  G+G
Sbjct:    1 AVMGRNLALNIESRGYTVSIFNRSREKTEEVV--AENPGK-KLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIAAVAEDGEPCVIYIGADGAG 168
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAW (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MW2) GN=gnd PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.831e-38
Identity = 82/178 (46.07%), Postives = 117/178 (65.73%), Query Frame = 2 
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ GLAVMG+NLA N+  +G+ +SV NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAG 178
[Close]
BLAST of FC932301 vs. ExPASy Swiss-Prot
Match: 6PGD_STAAS (6-phosphogluconate dehydrogenase, decarboxylating OS=Staphylococcus aureus (strain MSSA476) GN=gnd PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.831e-38
Identity = 82/178 (46.07%), Postives = 117/178 (65.73%), Query Frame = 2 
Query:  152 RIGLAGLAVMGQNLALNVAEKGFPISVCNRTTSKVDETLDRAHREGQLPLTGHYTPRDFVLSIQRPRSVIILVKAGSPVDQTIAALSEHMSPGDCIIDGGNEWYLNTERRIHEASQQGLLYLGMGVSGGEEGARHGPSLMPGGSFEAYNNIRDILQKVAAQVDDG-PCVTYIGEGGSG 682
            +IG+ GLAVMG+NLA N+  +G+ +SV NR++ K D  ++ +  +   P    Y+  +FV S+++PR ++++V+AG   D TI +L   +  GD +IDGGN  Y +T RR    +Q  + ++GMGVSGGE GA  GPSLMPGG  EAYN + DIL  +AA+  DG  CVTYIG  G+G
Sbjct:    4 QIGVIGLAVMGKNLAWNIESRGYSVSVFNRSSEKTDLMVEESKGKNIHPT---YSLEEFVNSLEKPRKILLMVQAGKATDATIDSLLPLLDDGDILIDGGNTNYQDTIRRNKALAQSAINFIGMGVSGGEIGALTGPSLMPGGQEEAYNKVADILDAIAAKAKDGASCVTYIGPNGAG 178
The following BLAST results are available for this feature:
BLAST of FC932301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
6PGD_SHISO5.707e-3947.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIDY5.707e-3947.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHIBO5.707e-3947.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_RAT5.707e-3948.076-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_HUMAN9.734e-3947.516-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_ESCVU2.832e-3847.956-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_SHEEP3.699e-3846.966-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_CITFR3.699e-3847.376-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAW4.831e-3846.076-phosphogluconate dehydrogenase, decarboxylating ... [more]
6PGD_STAAS4.831e-3846.076-phosphogluconate dehydrogenase, decarboxylating ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207B05EF PostHarveN Citrus clementina cDNA clone C34207B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932301 ID=FC932301; Name=FC932301; organism=Citrus clementina; type=EST; length=706bp
TTCGCTCCCTCGACGAGTCCGTCGCGCTCTCACCAACCTCAATTTCCAGT
ATAAATTAATTTAAAAAACAAATAAATATATATCTCCTCCGCCCCAAATA
CTCACCATTTCTCTTTTTTCTTCAGTTTCAATGGAAGCCCCTGCTCTCTC
ACGCATCGGTCTTGCTGGCCTAGCCGTCATGGGCCAGAACCTGGCCCTAA
ACGTCGCTGAAAAAGGCTTCCCAATCTCCGTCTGCAACCGCACTACTTCC
AAAGTCGACGAAACCCTAGATCGGGCCCACCGCGAGGGTCAACTCCCTTT
GACCGGCCACTACACTCCCAGGGACTTCGTCCTCTCCATCCAACGCCCCA
GATCCGTCATCATCTTAGTCAAAGCCGGCTCTCCCGTTGACCAGACCATC
GCCGCCCTCTCGGAGCACATGTCCCCCGGCGACTGCATCATCGACGGCGG
CAACGAGTGGTACCTCAACACCGAGCGCCGTATCCATGAAGCCAGCCAGC
AGGGTTTGCTTTATCTCGGCATGGGGGTCTCCGGCGGCGAGGAAGGCGCG
CGTCATGGTCCCTCTTTGATGCCCGGTGGCTCCTTCGAGGCTTATAATAA
TATTCGAGATATTTTGCAAAAAGTTGCCGCCCAAGTTGATGATGGCCCTT
GTGTTACTTACATTGGTGAAGGCGGGTCTGGTATTTCGTTAAGATGGTCA
TACGGA
back to top