FC932302
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU31_BRAJA (3-isopropylmalate dehydrogenase 1 OS=Bradyrhizobium japonicum GN=leuB1 PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 1 Query: 43 ARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTK----VAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP--------IDLVIVRENTEDLYVKEERTIEG-PNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663 + T+ + ++ G+GIG EV RIL+ + G + TG LPD TV+ ++ E D L+GA P T A + +++LR K DLYAN+RP+ + P +D +I+RE T +Y E R IE P+G+ +R + S I R+ R+A TR + V K+NVL +T L+RE Sbjct: 5 SNTITVAVVGGEGIGPEVTDQSHRILKWFSDRRGAPVILREAQYGLIPYLATGKVLPDDTVEAME-EADAILWGATGGPETTEVPPAARKAGSLLSLRSKYDLYANLRPIVANPALADSAPLKAAVLKDVDFIIIRELTSGIYFGEPRGIETLPDGQ-----RRGFNTQQYTTSQI-------RRVARTAFELARTR-KGRVCSVDKANVL-ETSVLWRE 209
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 67/207 (32.37%), Postives = 106/207 (51.21%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQK-TGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTN---GKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALR--RQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFR 660 I +IPGDGIG E + A ++LE+ + L ++ +AG F++ + +P +T+++++K L G + +P G S V LRK + YANVRPV+ G+ IDLV+VREN EDLY E ++ P+ VA+ +K IS S +I A E+A R+K+ A+ KSN++ +G + Sbjct: 22 ITVIPGDGIGPECVEATLKVLEAAKAPL----AYEVREAGASVFRRGIASGVPQETIESIRKT-RVVLKGPLETPVGY--GEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEH-MQTPS--VAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCAT---------------KSNIMKLAEGTLK 203
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_STAES (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=icd PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 60/218 (27.52%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSL---NLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG----KPIDLVIVRENTEDLYV---------KEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663 I I GDGIG ++ A R++++ + + ++ AG + + +TG LP +T++T+K+ A+ G +++P G S VALR++LDL+ +RPV+ G + + +D+VI RENTED+Y + ++ I+ ++ R E + I ++ E R +R+A ++ VT+ HK N++ T+G F++ Sbjct: 21 IPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLI-AVKGPLTTPIG--GGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTER--LVRAAIQYALDNNRKSVTLVHKGNIMKFTEGSFKQ 233
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_STAEQ (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=icd PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 60/218 (27.52%), Postives = 111/218 (50.92%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSL---NLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG----KPIDLVIVRENTEDLYV---------KEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663 I I GDGIG ++ A R++++ + + ++ AG + + +TG LP +T++T+K+ A+ G +++P G S VALR++LDL+ +RPV+ G + + +D+VI RENTED+Y + ++ I+ ++ R E + I ++ E R +R+A ++ VT+ HK N++ T+G F++ Sbjct: 21 IPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLI-AVKGPLTTPIG--GGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTER--LVRAAIQYALDNNRKSVTLVHKGNIMKFTEGSFKQ 233
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14 Identity = 64/203 (31.53%), Postives = 108/203 (53.20%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTE-DLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFR 660 + LIPGDG+G+E+ + R I E+ ++ + + +++ +T K G + V++LK+ G L G +P+ + G+ S VALRK+LD+YANV K+ G T IDL+++RENTE + E ++ G V E++K ++ + RI+ A + A + ++ VT HK+N++ DGLFR Sbjct: 31 VTLIPGDGVGKEITDSVRTIFEA--ENIPIDWETINIK---QTDHKEGVY---EAVESLKRNKIG-LKGLWHTPADQT-GHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPG----VVESLKVMTRPKTERIARFAFDFAKK-------------YNRKSVTAVHKANIMKLGDGLFR 206
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_PROMT (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain NATL2A) GN=leuB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 1 Query: 46 RTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPS----TKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG--------KPIDLVIVRENTEDLYVKEER-TIEGPNGKVAEAIKRISEHASFRISNIAGEIALRR-QKIRSASPA 582 ++ +I L+PGDGIG E+ +IL+ + + F ++ G G PD+T+ K D L A+ P + + ++ LR LDL+AN+RPVK T K +DLV+VRE T +Y E + I+ G+ A + RI+ IA ++A +R QK+ S A Sbjct: 2 KSYKITLLPGDGIGPEITNVTHKILDLVSRKFGFEIKFKEMPFGGSAIDSDGIPFPDRTLQECKNS-DAVLLAAIGDPKYDELPREKRPETGLLNLRSSLDLFANIRPVKIIPSLTKASSLKEDFVKEVDLVVVRELTSGIYFGEPKGRIKTDKGERAFNTMTYTSEEVNRIAEIAFKLAKQRNQKVCSVDKA 193
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_CLAMS (3-isopropylmalate dehydrogenase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=leuB PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 67/225 (29.78%), Postives = 105/225 (46.67%), Query Frame = 1 Query: 46 RTLRIGLIPGDGIGREVIPAGRRIL-ESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSP--STKVAG---YSSPIVALRKKLDLYANVRPVKTTAGNTN----GKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALR-----RQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETARR 675 RT+ + ++PGDGIG EV+ R+L E++P+ ++L + AG+ F +TG L D + L + D L GAV ++AG ++ LR D Y N+RP G + +D V+VRE T EGP ++R +EH IA E+++ + +R A RD+ VT+ HK+NVL+ L++ T R Sbjct: 3 RTISLAVVPGDGIGPEVVHEALRVLREAVPADVSLDTTQYPFGAGH--FLETGQILTDSDLAALAQH-DAILLGAVGGDPRDARLAGGIIERGLLLKLRFAFDHYINLRPTALLPGVASPLAAPGQVDFVVVREGT-----------EGPYAGNGGVLRRGTEH------EIATEVSVNTAHGVERTVRFAFELAEKRDRKRVTLVHKTNVLTFAGSLWQRTVDR 207
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTA--LPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672 + LIPGDGIG E+ + +I ++ + + + + Q G +P + +++ K G L G + +P AG+ S + LRK DLYANVRP + G T +++V +RENTE Y E I V ++IK I+E AS RI+ A E A + + VT HK+N++ +DGLF + R Sbjct: 34 VTLIPGDGIGPEISASVMKIFDAAKAPIQWE------ERNVTAIQGPGGKWMIPPEAKESMDKNKMG-LKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIV---DGVVQSIKLITEGASKRIAEFAFEYARNNHR-------------SNVTAVHKANIMRMSDGLFLQKCR 216
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13 Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 1 Query: 58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTA--LPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672 + LIPGDGIG E+ A +I ++ + + + + Q G +P + +++ K G L G + +P AG+ S + LRK DLYANVRP + G T +++V +RENTE Y E I V ++IK I+E S RI+ A E A + + VT HK+N++ +DGLF + R Sbjct: 15 VTLIPGDGIGPEISAAVMKIFDAAKAPIQWE------ERNVTAIQGPGGKWMIPSEAKESMDKNKMG-LKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIV---DGVVQSIKLITEGGSKRIAEFAFEYARNNHR-------------SNVTAVHKANIMRMSDGLFLQKCR 197
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_RALSO (3-isopropylmalate dehydrogenase OS=Ralstonia solanacearum GN=leuB PE=3 SV=2) HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13 Identity = 64/187 (34.22%), Postives = 96/187 (51.34%), Query Frame = 1 Query: 55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVS----SPSTKVAGYSSPIVALRKKLDLYANVRPV---KTTAGNTNGKP-----IDLVIVRENTEDLYVKEERTIE-GPNGKVAEA-----IKRISEHASFRISNIAGEIALRRQK 561 +I ++PGDGIG E++ ++L++L + ++ + V AGYE G LP+ T+ L KE D LFGAV + I+ LRK L L+AN RP AG ++ KP +D++IVRE T D+Y + R + P+G A A R SE RI+++A + A +R K Sbjct: 3 KIAVLPGDGIGTEIVAEAVKVLKTLGETFEMETAPVG-GAGYEA---KGHPLPEDTL-KLAKEADAILFGAVGDWKYDTLPRELRPEQAILGLRKHLQLFANFRPAICYPELAGASSMKPEIVAGLDILIVRELTGDIYFGQPRGVRAAPDGLFAGAREGFDTMRYSEPEIRRIAHVAFQAAAKRGK 184 The following BLAST results are available for this feature:
BLAST of FC932302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 199
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932302 ID=FC932302; Name=FC932302; organism=Citrus clementina; type=EST; length=680bpback to top |