FC932302

Overview
NameFC932302
Unique NameFC932302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU31_BRAJA (3-isopropylmalate dehydrogenase 1 OS=Bradyrhizobium japonicum GN=leuB1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 66/220 (30.00%), Postives = 100/220 (45.45%), Query Frame = 1
Query:   43 ARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTK----VAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP--------IDLVIVRENTEDLYVKEERTIEG-PNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            + T+ + ++ G+GIG EV     RIL+             +   G   +  TG  LPD TV+ ++ E D  L+GA   P T      A  +  +++LR K DLYAN+RP+       +  P        +D +I+RE T  +Y  E R IE  P+G+     +R      +  S I       R+  R+A     TR +  V    K+NVL +T  L+RE
Sbjct:    5 SNTITVAVVGGEGIGPEVTDQSHRILKWFSDRRGAPVILREAQYGLIPYLATGKVLPDDTVEAME-EADAILWGATGGPETTEVPPAARKAGSLLSLRSKYDLYANLRPIVANPALADSAPLKAAVLKDVDFIIIRELTSGIYFGEPRGIETLPDGQ-----RRGFNTQQYTTSQI-------RRVARTAFELARTR-KGRVCSVDKANVL-ETSVLWRE 209          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_THET8 (Isocitrate dehydrogenase [NADP] OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=icd PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 67/207 (32.37%), Postives = 106/207 (51.21%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQK-TGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTN---GKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALR--RQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFR 660
            I +IPGDGIG E + A  ++LE+  + L    ++   +AG   F++   + +P +T+++++K     L G + +P     G  S  V LRK  + YANVRPV+          G+ IDLV+VREN EDLY   E  ++ P+  VA+ +K IS   S +I   A E+A    R+K+  A+               KSN++   +G  +
Sbjct:   22 ITVIPGDGIGPECVEATLKVLEAAKAPL----AYEVREAGASVFRRGIASGVPQETIESIRKT-RVVLKGPLETPVGY--GEKSANVTLRKLFETYANVRPVREFPNVPTPYAGRGIDLVVVRENVEDLYAGIEH-MQTPS--VAQTLKLISWKGSEKIVRFAFELARAEGRKKVHCAT---------------KSNIMKLAEGTLK 203          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_STAES (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 12228) GN=icd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 60/218 (27.52%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSL---NLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG----KPIDLVIVRENTEDLYV---------KEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            I  I GDGIG ++  A  R++++          +  + ++ AG + + +TG  LP +T++T+K+    A+ G +++P     G  S  VALR++LDL+  +RPV+   G  +     + +D+VI RENTED+Y          + ++ I+    ++     R  E +   I  ++ E   R   +R+A       ++  VT+ HK N++  T+G F++
Sbjct:   21 IPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLI-AVKGPLTTPIG--GGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTER--LVRAAIQYALDNNRKSVTLVHKGNIMKFTEGSFKQ 233          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH_STAEQ (Isocitrate dehydrogenase [NADP] OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=icd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 60/218 (27.52%), Postives = 111/218 (50.92%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSL---NLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG----KPIDLVIVRENTEDLYV---------KEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRE 663
            I  I GDGIG ++  A  R++++          +  + ++ AG + + +TG  LP +T++T+K+    A+ G +++P     G  S  VALR++LDL+  +RPV+   G  +     + +D+VI RENTED+Y          + ++ I+    ++     R  E +   I  ++ E   R   +R+A       ++  VT+ HK N++  T+G F++
Sbjct:   21 IPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAYDETGEWLPQETLETIKEYLI-AVKGPLTTPIG--GGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPEDVDMVIFRENTEDIYAGIEFKQGTSEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTER--LVRAAIQYALDNNRKSVTLVHKGNIMKFTEGSFKQ 233          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH1_YEAST (Isocitrate dehydrogenase [NAD] subunit 1, mitochondrial OS=Saccharomyces cerevisiae GN=IDH1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.686e-14
Identity = 64/203 (31.53%), Postives = 108/203 (53.20%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTE-DLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFR 660
            + LIPGDG+G+E+  + R I E+   ++ + +  +++    +T  K G     + V++LK+   G L G   +P+ +  G+ S  VALRK+LD+YANV   K+  G  T    IDL+++RENTE +    E  ++ G    V E++K ++   + RI+  A + A +              ++  VT  HK+N++   DGLFR
Sbjct:   31 VTLIPGDGVGKEITDSVRTIFEA--ENIPIDWETINIK---QTDHKEGVY---EAVESLKRNKIG-LKGLWHTPADQT-GHGSLNVALRKQLDIYANVALFKSLKGVKTRIPDIDLIVIRENTEGEFSGLEHESVPG----VVESLKVMTRPKTERIARFAFDFAKK-------------YNRKSVTAVHKANIMKLGDGLFR 206          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_PROMT (3-isopropylmalate dehydrogenase OS=Prochlorococcus marinus (strain NATL2A) GN=leuB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 57/193 (29.53%), Postives = 89/193 (46.11%), Query Frame = 1
Query:   46 RTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPS----TKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNG--------KPIDLVIVRENTEDLYVKEER-TIEGPNGKVAEAIKRISEHASFRISNIAGEIALRR-QKIRSASPA 582
            ++ +I L+PGDGIG E+     +IL+ +      +  F ++  G       G   PD+T+   K   D  L  A+  P      +     + ++ LR  LDL+AN+RPVK     T          K +DLV+VRE T  +Y  E +  I+   G+ A      +     RI+ IA ++A +R QK+ S   A
Sbjct:    2 KSYKITLLPGDGIGPEITNVTHKILDLVSRKFGFEIKFKEMPFGGSAIDSDGIPFPDRTLQECKNS-DAVLLAAIGDPKYDELPREKRPETGLLNLRSSLDLFANIRPVKIIPSLTKASSLKEDFVKEVDLVVVRELTSGIYFGEPKGRIKTDKGERAFNTMTYTSEEVNRIAEIAFKLAKQRNQKVCSVDKA 193          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_CLAMS (3-isopropylmalate dehydrogenase OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=leuB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 67/225 (29.78%), Postives = 105/225 (46.67%), Query Frame = 1
Query:   46 RTLRIGLIPGDGIGREVIPAGRRIL-ESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSP--STKVAG---YSSPIVALRKKLDLYANVRPVKTTAGNTN----GKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALR-----RQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETARR 675
            RT+ + ++PGDGIG EV+    R+L E++P+ ++L  +     AG+  F +TG  L D  +  L +  D  L GAV       ++AG       ++ LR   D Y N+RP     G  +       +D V+VRE T           EGP       ++R +EH       IA E+++       + +R A      RD+  VT+ HK+NVL+    L++ T  R
Sbjct:    3 RTISLAVVPGDGIGPEVVHEALRVLREAVPADVSLDTTQYPFGAGH--FLETGQILTDSDLAALAQH-DAILLGAVGGDPRDARLAGGIIERGLLLKLRFAFDHYINLRPTALLPGVASPLAAPGQVDFVVVREGT-----------EGPYAGNGGVLRRGTEH------EIATEVSVNTAHGVERTVRFAFELAEKRDRKRVTLVHKTNVLTFAGSLWQRTVDR 207          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH3A_RAT (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial OS=Rattus norvegicus GN=Idh3a PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 65/208 (31.25%), Postives = 100/208 (48.08%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTA--LPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            + LIPGDGIG E+  +  +I ++  + +  +      +      Q  G    +P +  +++ K   G L G + +P    AG+ S  + LRK  DLYANVRP  +  G  T    +++V +RENTE  Y   E  I      V ++IK I+E AS RI+  A E A    +             + VT  HK+N++  +DGLF +  R
Sbjct:   34 VTLIPGDGIGPEISASVMKIFDAAKAPIQWE------ERNVTAIQGPGGKWMIPPEAKESMDKNKMG-LKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIV---DGVVQSIKLITEGASKRIAEFAFEYARNNHR-------------SNVTAVHKANIMRMSDGLFLQKCR 216          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: IDH3A_MACFA (Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial (Fragment) OS=Macaca fascicularis GN=IDH3A PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 65/208 (31.25%), Postives = 99/208 (47.60%), Query Frame = 1
Query:   58 IGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTA--LPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAG-NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETAR 672
            + LIPGDGIG E+  A  +I ++  + +  +      +      Q  G    +P +  +++ K   G L G + +P    AG+ S  + LRK  DLYANVRP  +  G  T    +++V +RENTE  Y   E  I      V ++IK I+E  S RI+  A E A    +             + VT  HK+N++  +DGLF +  R
Sbjct:   15 VTLIPGDGIGPEISAAVMKIFDAAKAPIQWE------ERNVTAIQGPGGKWMIPSEAKESMDKNKMG-LKGPLKTPIA--AGHPSMNLLLRKTFDLYANVRPCVSIEGYKTPYTDVNIVTIRENTEGEYSGIEHVIV---DGVVQSIKLITEGGSKRIAEFAFEYARNNHR-------------SNVTAVHKANIMRMSDGLFLQKCR 197          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_RALSO (3-isopropylmalate dehydrogenase OS=Ralstonia solanacearum GN=leuB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 64/187 (34.22%), Postives = 96/187 (51.34%), Query Frame = 1
Query:   55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVS----SPSTKVAGYSSPIVALRKKLDLYANVRPV---KTTAGNTNGKP-----IDLVIVRENTEDLYVKEERTIE-GPNGKVAEA-----IKRISEHASFRISNIAGEIALRRQK 561
            +I ++PGDGIG E++    ++L++L  +  ++ + V   AGYE     G  LP+ T+  L KE D  LFGAV         +       I+ LRK L L+AN RP       AG ++ KP     +D++IVRE T D+Y  + R +   P+G  A A       R SE    RI+++A + A +R K
Sbjct:    3 KIAVLPGDGIGTEIVAEAVKVLKTLGETFEMETAPVG-GAGYEA---KGHPLPEDTL-KLAKEADAILFGAVGDWKYDTLPRELRPEQAILGLRKHLQLFANFRPAICYPELAGASSMKPEIVAGLDILIVRELTGDIYFGQPRGVRAAPDGLFAGAREGFDTMRYSEPEIRRIAHVAFQAAAKRGK 184          
The following BLAST results are available for this feature:
BLAST of FC932302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
LEU31_BRAJA7.686e-1430.003-isopropylmalate dehydrogenase 1 OS=Bradyrhizobiu... [more]
IDH_THET87.686e-1432.37Isocitrate dehydrogenase [NADP] OS=Thermus thermop... [more]
IDH_STAES7.686e-1427.52Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH_STAEQ7.686e-1427.52Isocitrate dehydrogenase [NADP] OS=Staphylococcus ... [more]
IDH1_YEAST7.686e-1431.53Isocitrate dehydrogenase [NAD] subunit 1, mitochon... [more]
LEU3_PROMT1.004e-1329.533-isopropylmalate dehydrogenase OS=Prochlorococcus... [more]
LEU3_CLAMS1.004e-1329.783-isopropylmalate dehydrogenase OS=Clavibacter mic... [more]
IDH3A_RAT1.004e-1331.25Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
IDH3A_MACFA1.004e-1331.25Isocitrate dehydrogenase [NAD] subunit alpha, mito... [more]
LEU3_RALSO1.311e-1334.223-isopropylmalate dehydrogenase OS=Ralstonia solan... [more]

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Properties
Property NameValue
Genbank descriptionC34207B06EF PostHarveN Citrus clementina cDNA clone C34207B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932302 ID=FC932302; Name=FC932302; organism=Citrus clementina; type=EST; length=680bp
GGGAAGAAAGAACTCTTCAAAAGGTCTATCAAAATGGCTGCTGCCCGGAC
ACTTCGCATTGGTCTCATCCCCGGAGACGGTATCGGACGGGAGGTCATCC
CGGCTGGCCGTCGGATCCTTGAATCTCTCCCCTCTTCCCTCAACCTCAAG
TTCAGCTTCGTCGACCTCGATGCTGGCTACGAGACCTTCCAGAAGACTGG
TACCGCTCTGCCCGACAAGACTGTCGATACCCTGAAGAAGGAGTGTGACG
GTGCTCTCTTTGGCGCTGTCAGCTCCCCTAGCACCAAGGTCGCCGGCTAC
TCCTCGCCCATTGTCGCTCTCCGCAAGAAGCTTGACTTGTACGCCAACGT
CCGCCCGGTCAAGACCACCGCCGGCAACACCAATGGCAAGCCCATTGACC
TTGTCATCGTCCGCGAGAACACCGAGGACCTGTACGTGAAGGAAGAGCGC
ACCATCGAGGGCCCCAACGGAAAGGTTGCCGAGGCCATCAAGCGCATCTC
TGAGCATGCCTCTTTCCGCATCTCCAACATCGCTGGTGAGATTGCGCTCC
GCCGCCAGAAAATCCGTTCCGCTTCCCCCGCCACCTCTACCCGTGACCAG
GCCATGGTTACCATCACCCACAAGTCGAACGTGCTCTCCCAGACTGACGG
TCTCTTCCGTGAGACCGCGCGCCGGGCTCT
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