FC932302

Overview
NameFC932302
Unique NameFC932302
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_CORA7 (3-isopropylmalate dehydrogenase OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=leuB PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 62/212 (29.25%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   52 LRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSP--IVALRKKLDLYANVRPVK----TTAGNTNGKPIDLVIVRENTEDLYVKEERTI-EGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRET 666
            +++ +I GDGIG EV     ++L ++   + +     D D G   + + G  L D    +L+ E D  L GA+ +P     G      ++ +R  LD + N+RP K    +T+   N   ID V+VRE TE LY     T+ EG   +VA  + + +     R+   A + A+ R+K               VT+ HK+NVL    GL++ T
Sbjct:    1 MKLAVIGGDGIGPEVTAEALKVLRAVRQDVEV----TDYDLGARRYLRNGELLSDADFASLR-EHDAILLGAIGAPGEVPPGVLERGLLLKMRFALDHHVNLRPSKLYPTSTSPLANPGDIDFVVVREGTEGLYCGNGGTLREGTEHEVASEVSQNTRFGVERVVRDAFQRAMGRRK--------------HVTLVHKTNVLVNAGGLWQRT 193          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_BACLD (3-isopropylmalate dehydrogenase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=leuB PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 71/218 (32.57%), Postives = 99/218 (45.41%), Query Frame = 1
Query:   55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSP----STKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP--------IDLVIVRENTEDLYV-KEERTIEGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRETA 669
            RI L+PGDGIG EV+ A   +L+S+      +F F     G     + G  LP++TV    K  D  L GAV  P    +         ++A+RK+LDL+AN+RPVK         P        +D VIVRE T  LY  K        NG+  EA+  +    S              + IR A     +R +  VT   K+NVL ++  L+R+TA
Sbjct:    4 RIALLPGDGIGPEVLDAAVDVLKSVAEHYQHEFEFEYGLIGGAAIDEAGAPLPEETVAAC-KAADAILLGAVGGPKWDQNPSELRPEKGLLAIRKQLDLFANLRPVKVFESLAGASPLKTEYIEGVDFVIVRELTGGLYFGKPSEQYVNQNGE-EEAVDTLFYKKS-----------EMERVIREAFQMAQSR-KGKVTSVDKANVL-ESSKLWRKTA 206          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: TTUC_PSEPU (Tartrate dehydrogenase/decarboxylase OS=Pseudomonas putida PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 53/141 (37.59%), Postives = 72/141 (51.06%), Query Frame = 1
Query:   43 ARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLD-AGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSS---PIVALRKKLDLYANVRPVKTTAG------NTNGKPIDLVIVRENTEDLY 435
            A + RI  IPGDGIG EV+P G R+LE+      L   F   + A  + + + G  +PD   + L K+ D   FGAV  P  KV  + S    ++  R++ D Y N+RPV+   G      N     ID V+VRENTE  Y
Sbjct:    3 AHSFRIAAIPGDGIGLEVLPEGIRVLEAAALKHGLALEFDTFEWASCDYYLQHGKMMPDDWAEQL-KQYDAIYFGAVDWPD-KVPDHISLWGSLLKFRREFDQYVNIRPVRLFPGVPCALANRKVGDIDFVVVRENTEGEY 141          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_CORDI (3-isopropylmalate dehydrogenase OS=Corynebacterium diphtheriae GN=leuB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.712e-13
Identity = 61/212 (28.77%), Postives = 99/212 (46.70%), Query Frame = 1
Query:   52 LRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGYSSP--IVALRKKLDLYANVRPVK----TTAGNTNGKPIDLVIVRENTEDLYVKEERTI-EGPNGKVAEAIKRISEHASFRISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRET 666
            +++ +I GDGIG EV     ++L ++   + +     D D G   + + G  L D  + +L+ E D  L GA+ +P     G      ++ +R  LD + N+RP K     T+   N   ID V+VRE TE LY     T+ EG   ++A  + + + +   R+   A E A  R+K               +T+ HK+NVL    GL++ T
Sbjct:    1 MKLAVIGGDGIGPEVTAEALKVLNAVRDDIEV----TDYDLGARRYLRNGELLADADLVSLR-EHDAILLGAIGAPGEVPPGVLERGLLLKMRFALDHHVNLRPSKLYPTATSPLANPGDIDFVVVREGTEGLYCGNGGTLREGTPHEIASEVSQNTRYGVERVVRDAFERAQNRKK--------------HLTLVHKTNVLVNAGGLWQRT 193          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVY (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   46 RTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTK-VAGYSSP----IVALRKKLDLYANVRPVKTTAG---------NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASF-RISNIAGEIA-LRRQKIRSASPA 582
            +T +I ++PGDGIG EV+    ++L+++     + F   + D G       G  LP  TV T  +E D  LFG+V  P  + +     P    ++ LRK   L+ N+RP +  +G         + +G+  D+V+VRE T  +Y  + +  EG           I       RI+ IA E A LRR+K+ S   A
Sbjct:    4 KTYKIAVLPGDGIGPEVMAQAHKVLDAIEKKHAIHFEREEHDVGGIAIDNHGCPLPQSTV-TACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHSGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKGREGEGANEKAYDTEIYHRFEIERIAKIAFESARLRRKKVCSIDKA 197          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_VIBVU (3-isopropylmalate dehydrogenase OS=Vibrio vulnificus GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 59/195 (30.26%), Postives = 92/195 (47.18%), Query Frame = 1
Query:   46 RTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTK-VAGYSSP----IVALRKKLDLYANVRPVKTTAG---------NTNGKPIDLVIVRENTEDLYVKEERTIEGPNGKVAEAIKRISEHASF-RISNIAGEIA-LRRQKIRSASPA 582
            +T +I ++PGDGIG EV+    ++L+++     + F   + D G       G  LP  TV T  +E D  LFG+V  P  + +     P    ++ LRK   L+ N+RP +  +G         + +G+  D+V+VRE T  +Y  + +  EG           I       RI+ IA E A LRR+K+ S   A
Sbjct:    4 KTYKIAVLPGDGIGPEVMAQAHKVLDAIEKKHAIHFEREEHDVGGIAIDNHGCPLPQSTV-TACEESDAVLFGSVGGPKWEHLPPNDQPERGALLPLRKHFQLFCNLRPAQIHSGLEAFSPLRADISGRGFDIVVVRELTGGIYFGQPKGREGEGANEKAYDTEIYHRFEIERIAKIAFESARLRRKKVCSIDKA 197          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_THETN (3-isopropylmalate dehydrogenase OS=Thermoanaerobacter tengcongensis GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 72/226 (31.86%), Postives = 103/226 (45.58%), Query Frame = 1
Query:   55 RIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPS-TKVAGYSSP---IVALRKKLDLYANVRPVKTTAGNTNGKP---------IDLVIVRENTEDLYVKEERTIEGPNGKVAEAI--------KRISEHASF-RISNIAGEIALRRQKIRSASPATSTRDQAMVTITHKSNVLSQTDGLFRET 666
            RI ++PGDGIG EVI  G ++L+++     L+F       G E   K G   P++T +      D  L GAV  P    + G   P   ++ALRK L +YAN+RP        +  P         +D+++VRE T  +Y        GP GK  EAI          + E     RI+ IA E ALRR+K               +T   K+NVL ++  L+R+T
Sbjct:    3 RIAVLPGDGIGPEVIEEGLKVLKAVEEKYGLRFDIKKYPFGGEAIDKYGEPYPEETRNGCLSS-DAVLLGAVGGPKWDGLEGDKRPEAGLLALRKSLGVYANLRPAVLYPSLKDASPLKNELLEKGLDILVVRELTGGIYF-------GPRGK--EAIGYGFRAYDTEVYETQEIERIAVIAFEAALRRRK--------------KITSVDKANVL-ESSRLWRKT 203          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_SYMTH (3-isopropylmalate dehydrogenase OS=Symbiobacterium thermophilum GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 59/189 (31.22%), Postives = 89/189 (47.09%), Query Frame = 1
Query:   40 AARTLRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVSSPSTKVAGY----SSPIVALRKKLDLYANVRPV------KTTAGNTN---GKPIDLVIVRENTEDLYVKEERTIEG-PNGKVAEAIKRISEHASF-RISNIAGEIALRRQK 561
            A  T  I  +PGDGIG EV      +L++  ++   +  F +   G   +   GT  PD+T D   +  D  LFGAV  P  +   +     + ++A+RK+ DLYAN+RP+      K  +   N   G  +D +IVRE    +Y  E R IE  P+G        +   A   RI+ +  EIA  R++
Sbjct:    2 AQPTYHIACLPGDGIGPEVTRGAVTVLQAAAAAYGFRLEFSEYLVGGAAYDAVGTPFPDETRDACDR-ADAILFGAVGGPRYEGLPWDLRPEAGLLAIRKRYDLYANLRPILLYPPLKDASPLKNEIIGGGVDFIIVRELVGGIYFGEPRGIETLPDGTRRGVNTEVYTDAEIARIARMGFEIARGRRR 189          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_BURPS (3-isopropylmalate dehydrogenase OS=Burkholderia pseudomallei GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 62/188 (32.98%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   52 LRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVS----SPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP--------IDLVIVRENTEDLYVKEERTIE-GPNGKVAEA-----IKRISEHASFRISNIAGEIALRRQK 561
            ++I ++PGDGIG E++    ++L +L     L+ + V   AGYE    +G  LPD T+  L KE D  LFGAV         +       I+ LRK L+L+AN RP        +  P        +D++IVRE   D+Y  + R +   P+G  A A       R SE    RI+++A + A +R K
Sbjct:    1 MKIAVLPGDGIGPEIVNEAVKVLNALDEKFELEQAPVG-GAGYEA---SGHPLPDATL-ALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGAREGFDTMRYSEPEVRRIAHVAFQAARKRAK 183          
BLAST of FC932302 vs. ExPASy Swiss-Prot
Match: LEU3_BURP1 (3-isopropylmalate dehydrogenase OS=Burkholderia pseudomallei (strain 1710b) GN=leuB PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.236e-13
Identity = 62/188 (32.98%), Postives = 92/188 (48.94%), Query Frame = 1
Query:   52 LRIGLIPGDGIGREVIPAGRRILESLPSSLNLKFSFVDLDAGYETFQKTGTALPDKTVDTLKKECDGALFGAVS----SPSTKVAGYSSPIVALRKKLDLYANVRPVKTTAGNTNGKP--------IDLVIVRENTEDLYVKEERTIE-GPNGKVAEA-----IKRISEHASFRISNIAGEIALRRQK 561
            ++I ++PGDGIG E++    ++L +L     L+ + V   AGYE    +G  LPD T+  L KE D  LFGAV         +       I+ LRK L+L+AN RP        +  P        +D++IVRE   D+Y  + R +   P+G  A A       R SE    RI+++A + A +R K
Sbjct:    1 MKIAVLPGDGIGPEIVNEAVKVLNALDEKFELEQAPVG-GAGYEA---SGHPLPDATL-ALAKEADAILFGAVGDWKYDSLERALRPEQAILGLRKHLELFANFRPAICYPQLVDASPLKPELVAGLDILIVRELNGDIYFGQPRGVRAAPDGPFAGAREGFDTMRYSEPEVRRIAHVAFQAARKRAK 183          
The following BLAST results are available for this feature:
BLAST of FC932302 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
LEU3_CORA71.311e-1329.253-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_BACLD1.311e-1332.573-isopropylmalate dehydrogenase OS=Bacillus lichen... [more]
TTUC_PSEPU1.712e-1337.59Tartrate dehydrogenase/decarboxylase OS=Pseudomona... [more]
LEU3_CORDI1.712e-1328.773-isopropylmalate dehydrogenase OS=Corynebacterium... [more]
LEU3_VIBVY2.236e-1330.263-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_VIBVU2.236e-1330.263-isopropylmalate dehydrogenase OS=Vibrio vulnific... [more]
LEU3_THETN2.236e-1331.863-isopropylmalate dehydrogenase OS=Thermoanaerobac... [more]
LEU3_SYMTH2.236e-1331.223-isopropylmalate dehydrogenase OS=Symbiobacterium... [more]
LEU3_BURPS2.236e-1332.983-isopropylmalate dehydrogenase OS=Burkholderia ps... [more]
LEU3_BURP12.236e-1332.983-isopropylmalate dehydrogenase OS=Burkholderia ps... [more]

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Properties
Property NameValue
Genbank descriptionC34207B06EF PostHarveN Citrus clementina cDNA clone C34207B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932302 ID=FC932302; Name=FC932302; organism=Citrus clementina; type=EST; length=680bp
GGGAAGAAAGAACTCTTCAAAAGGTCTATCAAAATGGCTGCTGCCCGGAC
ACTTCGCATTGGTCTCATCCCCGGAGACGGTATCGGACGGGAGGTCATCC
CGGCTGGCCGTCGGATCCTTGAATCTCTCCCCTCTTCCCTCAACCTCAAG
TTCAGCTTCGTCGACCTCGATGCTGGCTACGAGACCTTCCAGAAGACTGG
TACCGCTCTGCCCGACAAGACTGTCGATACCCTGAAGAAGGAGTGTGACG
GTGCTCTCTTTGGCGCTGTCAGCTCCCCTAGCACCAAGGTCGCCGGCTAC
TCCTCGCCCATTGTCGCTCTCCGCAAGAAGCTTGACTTGTACGCCAACGT
CCGCCCGGTCAAGACCACCGCCGGCAACACCAATGGCAAGCCCATTGACC
TTGTCATCGTCCGCGAGAACACCGAGGACCTGTACGTGAAGGAAGAGCGC
ACCATCGAGGGCCCCAACGGAAAGGTTGCCGAGGCCATCAAGCGCATCTC
TGAGCATGCCTCTTTCCGCATCTCCAACATCGCTGGTGAGATTGCGCTCC
GCCGCCAGAAAATCCGTTCCGCTTCCCCCGCCACCTCTACCCGTGACCAG
GCCATGGTTACCATCACCCACAAGTCGAACGTGCTCTCCCAGACTGACGG
TCTCTTCCGTGAGACCGCGCGCCGGGCTCT
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