FC932308

Overview
NameFC932308
Unique NameFC932308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932308_ssr81 microsatellite FC932308_ssr81:81..95. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932308_ssr5 microsatellite FC932308_ssr5:5..16. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11532 contig Ccv1_Contig11532:138..870. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_HUMAN (Mitochondrial uncoupling protein 3 OS=Homo sapiens GN=UCP3 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 61/207 (29.47%), Postives = 93/207 (44.93%), Query Frame = 2
Query:  110 MGVKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQR-RNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            M VK F+  G A+  A   T PLD  KVR+Q+QGEN AV                                  L    G +   + + +TEG  + ++G+ A + RQ  +++ R+GLYD +KQ +T K ++  +L+ +                P DV  VR QA   L P++  R Y   +DA   + R+EGV  LW+G+   + R
Sbjct:   13 MAVK-FLGAGTAACFADLVTFPLDTAKVRLQIQGENQAVQ------------------------------TARLVQYRGVLGTILTMVRTEGPCSPYNGLVAGLQRQMSFASIRIGLYDSVKQVYTPKGADNSSLTTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHLGPSRSDRKYSGTMDAYRTIAREEGVRGLWKGTLPNIMR 188          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_CANFA (Mitochondrial uncoupling protein 3 OS=Canis familiaris GN=UCP3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.203e-16
Identity = 57/201 (28.36%), Postives = 87/201 (43.28%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+  A   T PLD  KVR+Q+QGEN A                              T A       G +   + + +TEG  + ++G+ A + RQ  +++ R+GLYD +KQ +T K S+  +++ +                P DV  VR QA   L     R Y   +DA   + R+EGV  LW+G+   + R
Sbjct:   17 FLGAGTAACFADLLTFPLDTAKVRLQIQGENQA------------------------------TQAARRIQYRGVLGTILTMVRTEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSSITTRILAGCTTGAMAVSCAQPTDVVKVRFQASIHLGAGSNRKYSGTMDAYRTIAREEGVRGLWKGTLPNITR 187          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_BOVIN (Mitochondrial uncoupling protein 3 OS=Bos taurus GN=UCP3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.229e-15
Identity = 59/201 (29.35%), Postives = 87/201 (43.28%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+  A   T PLD  KVR+Q+QGEN A          ALA  S                        G +   + + +TEG  +L+SG+ A + RQ  +++ R+GLYD +KQ +T K S+  ++  +                P DV  +R QA         R Y   +DA   + R+EGV  LW+G    + R
Sbjct:   17 FLAAGTAACFADLLTFPLDTAKVRLQIQGENQA----------ALAARSAQYR--------------------GVLGTILTMVRTEGPRSLYSGLVAGLQRQMSFASIRIGLYDSVKQFYTPKGSDHSSIITRILAGCTTGAMAVTCAQPTDVVKIRFQASMHTGLGGNRKYSGTMDAYRTIAREEGVRGLWKGILPNITR 187          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_RAT (Mitochondrial uncoupling protein 3 OS=Rattus norvegicus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.575e-15
Identity = 56/201 (27.86%), Postives = 88/201 (43.78%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+  A   T PLD  KVR+Q+QGEN  V    +                                  G +   + + +TEG  + +SG+ A + RQ  +++ R+GLYD +KQ +T K ++  +++ +                P DV  VR QA  RL     R Y+  +DA   + R+EGV  LW+G+   + R
Sbjct:   17 FLGAGTAACFADLLTFPLDTAKVRLQIQGENPGVQSVQYR---------------------------------GVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKGTDHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITR 184          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCPB_DICDI (Mitochondrial substrate carrier family protein ucpB OS=Dictyostelium discoideum GN=ucpB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 56/207 (27.05%), Postives = 97/207 (46.86%), Query Frame = 2
Query:  110 MGVKGFVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNRA 730
            +G+K F+ GG++ + A   ++P+D++K R Q+ GE +                        S S+             G ++  +KI + EG++A++ G++ ++LR+  YST RMG YDV+K  + D +     LS K               +P D+  VRMQA      ++   Y S+  A  +++ +EG+  LW+G   T  RA
Sbjct:    7 IGIK-FLFGGLSCMGAAVVSNPVDVLKTRFQIHGEGI-----------------------DSKSL-------------GLVNGTIKIIKNEGISAMYKGLTPSLLREATYSTLRMGGYDVIKNYFIDSNGKTNLLS-KVTSGALSGALGACITSPTDLIKVRMQAS-----SKGVKYDSISSAFKEIIAKEGIKGLWKGVGPTTQRA 170          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP2_CANFA (Mitochondrial uncoupling protein 2 OS=Canis familiaris GN=UCP2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.964e-15
Identity = 59/201 (29.35%), Postives = 86/201 (42.79%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+ +A   T PLD  KVR+Q+QGE                                P  A       G +   + + +TEG  +L+SG+ A + RQ  +++ R+GLYD +KQ +T K S    +  +                P DV  VR QA  R      R Y+S +DA   + R+EG   LW+G+S  V R
Sbjct:   17 FLGAGTAACIADLITFPLDTAKVRLQIQGERQG-----------------------------PVRAAASAQYRGVLCTILTMVRTEGPRSLYSGLVAGLQRQMSFASVRIGLYDSVKQFYT-KGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQAR--AGSGRRYQSTVDAYKTIAREEGFRGLWKGTSPNVAR 185          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_MOUSE (Mitochondrial uncoupling protein 3 OS=Mus musculus GN=Ucp3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 55/201 (27.36%), Postives = 87/201 (43.28%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+  A   T PLD  KVR+Q+QGEN       +                                  G +   + + +TEG  + +SG+ A + RQ  +++ R+GLYD +KQ +T K ++  +++ +                P DV  VR QA  RL     R Y+  +DA   + R+EGV  LW+G+   + R
Sbjct:   17 FLGAGTAACFADLLTFPLDTAKVRLQIQGENPGAQSVQYR---------------------------------GVLGTILTMVRTEGPRSPYSGLVAGLHRQMSFASIRIGLYDSVKQFYTPKGADHSSVAIRILAGCTTGAMAVTCAQPTDVVKVRFQAMIRLGTGGERKYRGTMDAYRTIAREEGVRGLWKGTWPNITR 184          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: DIC1_CANGA (Mitochondrial dicarboxylate transporter OS=Candida glabrata GN=DIC1 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 59/189 (31.22%), Postives = 82/189 (43.39%), Query Frame = 2
Query:  134 GGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLW 700
            GG A I A  +THPLDL KVR  LQ   +  P  V  LR                                       I + EG+  L++G+SA++LRQ  Y+T R G+YD LK+    +D     +                  N AD+  +RMQ D  LP  +RRNYK+ ID + ++ + EG  SL+
Sbjct:   13 GGAAGIFAVMNTHPLDLTKVR--LQAAPIPKPTIVQMLR--------------------------------------SILKNEGIVGLYAGLSASLLRQCTYTTARFGMYDALKEHVIPRD-KLTNMWYLLGASMVSGALGGLAGNFADLINIRMQNDSALPLDKRRNYKNAIDGMVKIYKAEGAKSLF 160          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP2_RAT (Mitochondrial uncoupling protein 2 OS=Rattus norvegicus GN=Ucp2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.774e-14
Identity = 56/201 (27.86%), Postives = 91/201 (45.27%), Query Frame = 2
Query:  125 FVEGGIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            F+  G A+ +A   T PLD  KVR+Q+QGE+  + +   S +                               G +   + + +TEG  +L++G+ A + RQ  +++ R+GLYD +KQ +T K S    +  +                P DV  VR QA  R    +R  Y+S ++A   + R+EG+  LW+G+S  V R
Sbjct:   17 FLGAGTAACIADLITFPLDTAKVRLQIQGESQGLARTAASAQYR-----------------------------GVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT-KGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRR--YQSTVEAYKTIAREEGIRGLWKGTSPNVAR 185          
BLAST of FC932308 vs. ExPASy Swiss-Prot
Match: UCP3_PIG (Mitochondrial uncoupling protein 3 OS=Sus scrofa GN=UCP3 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.317e-14
Identity = 53/197 (26.90%), Postives = 82/197 (41.62%), Query Frame = 2
Query:  137 GIASIVAGCSTHPLDLIKVRMQLQGENVAVPQQVHSLRPALAFHSNSATVFPSNSIHIPTTAPELPPRVGPISVGVKIFQTEGVAALFSGVSATVLRQTLYSTTRMGLYDVLKQKWTDKDSNRMTLSRKXXXXXXXXXXXXXXXNPADVAMVRMQADGRLPPAQRRNYKSVIDAITQMLRQEGVASLWRGSSLTVNR 727
            G A+  A   T PLD  KVR+Q+QGEN A     +                                  G +   + + + EG  + ++G+ A + RQ  +++ R+GLYD +KQ +T K S+  +++ +                P DV  VR QA     P   R Y   +DA   + R+EGV  LW+G    + R
Sbjct:   21 GTAACFADLLTFPLDTAKVRLQIQGENQAARSAQYR---------------------------------GVLGTILTMVRNEGPRSPYNGLVAGLQRQMSFASIRIGLYDSVKQLYTPKGSDHSSITTRILAGCTTGAMAVTCAQPTDVVKVRFQASIHAGPRSNRKYSGTMDAYRTIAREEGVRGLWKGILPNITR 184          
The following BLAST results are available for this feature:
BLAST of FC932308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
UCP3_HUMAN7.203e-1629.47Mitochondrial uncoupling protein 3 OS=Homo sapiens... [more]
UCP3_CANFA7.203e-1628.36Mitochondrial uncoupling protein 3 OS=Canis famili... [more]
UCP3_BOVIN1.229e-1529.35Mitochondrial uncoupling protein 3 OS=Bos taurus G... [more]
UCP3_RAT3.575e-1527.86Mitochondrial uncoupling protein 3 OS=Rattus norve... [more]
UCPB_DICDI7.964e-1527.05Mitochondrial substrate carrier family protein ucp... [more]
UCP2_CANFA7.964e-1529.35Mitochondrial uncoupling protein 2 OS=Canis famili... [more]
UCP3_MOUSE1.040e-1427.36Mitochondrial uncoupling protein 3 OS=Mus musculus... [more]
DIC1_CANGA1.040e-1431.22Mitochondrial dicarboxylate transporter OS=Candida... [more]
UCP2_RAT1.774e-1427.86Mitochondrial uncoupling protein 2 OS=Rattus norve... [more]
UCP3_PIG2.317e-1426.90Mitochondrial uncoupling protein 3 OS=Sus scrofa G... [more]

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Properties
Property NameValue
Genbank descriptionC34207B12EF PostHarveN Citrus clementina cDNA clone C34207B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932308 ID=FC932308; Name=FC932308; organism=Citrus clementina; type=EST; length=734bp
GATCAGCAAGCAAGCATTACTATTACATTACACGCTTGACACTCTTCACT
TCGTTTCCTGATCCTCCAATTTTTTTTTTAATTATTATTATTATTGTTAT
TTTTAAATCATGGGTGTTAAAGGATTTGTTGAGGGCGGAATTGCTTCAAT
TGTAGCTGGTTGCTCTACACATCCTCTCGATCTAATTAAAGTTCGCATGC
AACTCCAAGGCGAAAACGTCGCCGTTCCCCAGCAAGTCCACTCTCTCCGT
CCGGCTCTGGCTTTTCATTCCAACTCAGCCACTGTCTTTCCCTCTAATTC
CATCCATATCCCCACCACCGCACCAGAGCTGCCGCCACGTGTCGGTCCTA
TCTCCGTCGGAGTCAAGATCTTTCAAACCGAAGGCGTCGCCGCTTTGTTC
TCTGGCGTTTCCGCCACCGTGCTGAGACAAACATTGTACTCCACCACTCG
CATGGGGCTTTACGATGTGCTCAAACAAAAGTGGACTGACAAAGACTCCA
ACCGCATGACGTTGAGCCGCAAAGTAGCGGCCGGTTTGATCGCCGGAGCA
GTTGGGGCCACGGTTGGCAACCCCGCTGACGTGGCAATGGTCCGCATGCA
AGCCGACGGCCGCCTCCCACCGGCTCAGCGGCGTAACTACAAGAGCGTAA
TCGACGCGATCACGCAAATGTTGAGGCAAGAGGGGGTCGCCAGTCTCTGG
CGCGGATCATCGCTGACGGTGAACCGGGCGATGA
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