FC932320

Overview
NameFC932320
Unique NameFC932320
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15486 contig Ccv1_Contig15486:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_HALS3 (50S ribosomal protein L5P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.102e-20
Identity = 56/161 (34.78%), Postives = 85/161 (52.80%), Query Frame = 2
Query:  101 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 580
            MRE +++K+V+++ VG+ G  L  A  +LE ++GQ  V +KA+     FG+R+ + I   VT+R D A+  LE  L   + +  RR F +TG   FGI+EH D    +YDP+ GIYGMD  V L                    HR+  EDA+ +    ++
Sbjct:   12 MREPRIEKVVVHMGVGQGGVELQNAETILEAITGQQTVRTKAKSPEPEFGLRQGDPIGAKVTLRDDTAVDFLERALPAADLD--RRQFDNTGNVSFGIEEHTDFPSQEYDPNIGIYGMDVTVNLTRPGYRVAKRDQGTRQIPSNHRLNSEDAVSFLVSNFD 170          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.028e-19
Identity = 54/170 (31.76%), Postives = 88/170 (51.76%), Query Frame = 2
Query:   71 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577
            M+      + MRE +++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L                   +HR+T  DA+++ + ++
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRVTKRDKASQPIPSRHRLTPSDAVQFIESEF 168          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = 2
Query:   20 RLRLH*AAAVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            RLR H  + V    + ++  E    NPM+   ++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:    9 RLRTHYDSVV----RPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.363e-11
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   92 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            SN M+  K++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C VT+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 2
Query:   68 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            +M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 2
Query:   59 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 2
Query:   59 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   68 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV +KAR ++  F +R +  I   VT+RG++  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   18 RGAMQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_AGRRK (50S ribosomal protein L5 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 2
Query:   68 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 463
            R A ++K S  N M+  K+ K+V+N+ VGE+     + T AA  L  ++GQ PV + AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   19 RAALQEKFSYANEMQIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITHARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of FC932320 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  113 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 466
            K++K+V+N+ VGE+      +  A   L  +SGQ PV + AR ++ +F +R N KI C VT+R D+    LE  +     +VKE+     ++F   G F FG++E I    I YD    I GMD  +V
Sbjct:   30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157          
The following BLAST results are available for this feature:
BLAST of FC932320 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
RL5_HALS36.102e-2034.7850S ribosomal protein L5P OS=Halobacterium salinar... [more]
RL5_HALWD3.028e-1931.7650S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_AZOC57.988e-1229.7550S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]
RL5_PHEZH1.363e-1132.8450S ribosomal protein L5 OS=Phenylobacterium zucin... [more]
RL5_XANP21.780e-1130.2850S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_RHIEC1.780e-1133.3350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_RHIE61.780e-1133.3350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_AGRT53.964e-1134.0350S ribosomal protein L5 OS=Agrobacterium tumefaci... [more]
RL5_AGRRK5.178e-1134.0350S ribosomal protein L5 OS=Agrobacterium radiobac... [more]
RL5_RICPR6.762e-1135.9450S ribosomal protein L5 OS=Rickettsia prowazekii ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207C12EF PostHarveN Citrus clementina cDNA clone C34207C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932320 ID=FC932320; Name=FC932320; organism=Citrus clementina; type=EST; length=722bp
GACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGCAGCGGCAGTAA
CTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAACTTTCGAACCCC
ATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGA
AAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTG
GACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGG
ATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAA
GGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTC
TGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAG
CATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTAT
GGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGACGCC
GTAGGTGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGAT
GCAATGAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTC
CCAGAATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTAT
AGTGTTGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACCTG
AGTAGATGCTTTTGGTAGTTCA
back to top