FC932323

Overview
NameFC932323
Unique NameFC932323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932323_ssr139 microsatellite FC932323_ssr139:139..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14381 contig Ccv1_Contig14381:92..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_YEAST (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae GN=SLX1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWESLNITVNYFSTK 552
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++ +N+ V  F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVEVFNIK 139          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_YEAS7 (Structure-specific endonuclease subunit SLX1 OS=Saccharomyces cerevisiae (strain YJM789) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.373e-17
Identity = 50/129 (38.76%), Postives = 76/129 (58.91%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWESLNITVNYFSTK 552
            F+ CYLL S+  R     Y+G T NP RR+RQHNG++  G A RTK+   RPWEM++ + GFP+ ++ALQFE AWQH  ++  +       K  +G   + +K+ L   +L    ++ +N+ V  F+ K
Sbjct:   13 FYCCYLLQSINKRQS--FYVGSTPNPVRRLRQHNGKLAVGGAYRTKRDGSRPWEMIMIVRGFPSKIAALQFEHAWQHGYQTHYIAEKDRVVKHKAGGRTLHHKVALMKLLLKHEFFQRMNLIVEVFNIK 139          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_SCHPO (Structure-specific endonuclease subunit slx1 OS=Schizosaccharomyces pombe GN=slx1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 41/74 (55.41%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQH 405
            F+ CYLL S   +  G  YIG T +P RR+RQHNGEI  GA +TK  RPW +   +YGFP  VSAL+FEW WQ+
Sbjct:    6 FYCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGEIVGGASKTKHGRPWSISCLVYGFPNKVSALKFEWNWQN 79          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_ASHGO (Structure-specific endonuclease subunit SLX1 OS=Ashbya gossypii GN=SLX1 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.794e-17
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEI-RCGAVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAATFKSFSG---VANKIKLAYTMLNLPNWESLNITVNYFS 546
            F+ CYLL S+  R     YIG T NP RR+RQHNG + + GA RTK++  RPWE+   + GFP+ ++ALQFE AWQHP ++  ++      K   G   +  ++ +   +L+ P ++ +++ V+ FS
Sbjct:   13 FYCCYLLRSIPKRLS--YYIGSTPNPVRRLRQHNGLLTKGGAYRTKRQGTRPWELAASVSGFPSKIAALQFEHAWQHPYQTRFIKSEDRIVKKKGGGRSIHQRLAVLKLLLHHPFFKVMSLVVHLFS 137          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_USTMA (Structure-specific endonuclease subunit SLX1 OS=Ustilago maydis GN=SLX1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.816e-17
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHP 408
            F+ACY L SL     G TYIG T  P RR RQHNG +  GA +T + RPWEM   +YGF + ++ALQFEWAW  P
Sbjct:   13 FYACYFLRSLST--PGTTYIGSTPAPPRRKRQHNGHLTQGAYKTSRARPWEMECIVYGFSSKIAALQFEWAWAKP 85          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_GIALA (Structure-specific endonuclease subunit SLX1 homolog OS=Giardia lamblia GN=GL50803_16475 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.163e-16
Identity = 44/89 (49.44%), Postives = 54/89 (60.67%), Query Frame = 1
Query:  178 KGFFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRRAAAT 444
            +G FACY L +         YIGFT NP RRIRQHN +I  GA +T +  PW MVL + GF T VSAL+FE+ W +P  S  V   +AT
Sbjct:    8 RGLFACYCLVAESSESPKRCYIGFTNNPLRRIRQHNRKIAGGARKTSRYGPWRMVLFVGGFSTKVSALKFEYIWTYPTRSRYVNCISAT 96          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_MALGO (Structure-specific endonuclease subunit SLX1 OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=SLX1 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 46/118 (38.98%), Postives = 68/118 (57.63%), Query Frame = 1
Query:  187 FACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKKRRPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVR----------RAAATFKSFSGVANKIKLAYTMLNLPN 510
            + CY L SL       TYIG T +P RR+RQHNG ++ GA  T+  RPW M + +YGFP+ ++ALQFEW+WQ P  S  +R          +++AT   ++G ++K     T  + P+
Sbjct:   15 YVCYCLRSLSR--PNQTYIGSTPDPIRRLRQHNGLVKQGAFYTRMARPWTMDVVVYGFPSKLAALQFEWSWQKPHASRHLRVMHDDGTRPNKSSATAAVYAGRSSKPLFPATRSSAPS 130          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_BOTFB (Structure-specific endonuclease subunit slx1 OS=Botryotinia fuckeliana (strain B05.10) GN=slx1 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.518e-16
Identity = 51/136 (37.50%), Postives = 78/136 (57.35%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFE-WAWQHPMESLAV----RRAAATFKSFSG--------VANKIKLAYTMLNLPNWESLNITVNYFS 546
            F+ CYLL S         Y+G T NP RR+RQHNG ++ GAVRT +   RPWEM   + GFPT+++ALQF+ WAWQ+P  +L +    R + AT K  SG        + + +   + +L +P++    + + +F+
Sbjct:   15 FYGCYLLRSTIRH--SALYVGSTPNPVRRLRQHNGLVKGGAVRTSRGNLRPWEMACIVTGFPTSIAALQFDRWAWQNPHITLHIPPSSRISHATQKKRSGHPKRPRHTLQSLLSNLHILLTVPSFSRWPLEIKFFA 148          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_KLULA (Structure-specific endonuclease subunit SLX1 OS=Kluyveromyces lactis GN=SLX1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.590e-16
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAV---RRAAATFKSFSGVANKIKLAYTMLNLPNWESLNITVNYF 543
            F+  YLL S+ P+     YIG + +P RR+RQHNG +R G A RTK+   RPW+MV  IYGF + ++ALQFE AWQH  ++  +    R      + +G+A K+  A  ++  P ++ +N+ + +F
Sbjct:   11 FYCSYLLRSI-PKPNSF-YIGSSPDPVRRLRQHNGAVRRGGAYRTKRNGTRPWKMVCFIYGFTSKIAALQFEHAWQHSYKTRFIENNERLVTKKNTRNGIATKLGNARLLMKHPYFDKMNLHIRFF 134          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_ASPNC (Structure-specific endonuclease subunit slx1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=slx1 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.418e-16
Identity = 42/80 (52.50%), Postives = 54/80 (67.50%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMES 417
            ++ CYLL S   + +   YIG T +P RR+ QHNGE + GA +T K  +RPWEMVL + GF + V ALQFEWAWQ+P  S
Sbjct:   15 YYCCYLLRST--KQRTSLYIGSTPHPARRLAQHNGESKGGARKTAKDDKRPWEMVLLVEGFTSRVGALQFEWAWQNPRMS 92          
The following BLAST results are available for this feature:
BLAST of FC932323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
SLX1_YEAST1.373e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_YEAS71.373e-1738.76Structure-specific endonuclease subunit SLX1 OS=Sa... [more]
SLX1_SCHPO1.794e-1755.41Structure-specific endonuclease subunit slx1 OS=Sc... [more]
SLX1_ASHGO1.794e-1738.58Structure-specific endonuclease subunit SLX1 OS=As... [more]
SLX1_USTMA6.816e-1754.67Structure-specific endonuclease subunit SLX1 OS=Us... [more]
SLX1_GIALA1.163e-1649.44Structure-specific endonuclease subunit SLX1 homol... [more]
SLX1_MALGO1.518e-1638.98Structure-specific endonuclease subunit SLX1 OS=Ma... [more]
SLX1_BOTFB1.518e-1637.50Structure-specific endonuclease subunit slx1 OS=Bo... [more]
SLX1_KLULA2.590e-1638.89Structure-specific endonuclease subunit SLX1 OS=Kl... [more]
SLX1_ASPNC4.418e-1652.50Structure-specific endonuclease subunit slx1 OS=As... [more]

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Properties
Property NameValue
Genbank descriptionC34207D04EF PostHarveN Citrus clementina cDNA clone C34207D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932323 ID=FC932323; Name=FC932323; organism=Citrus clementina; type=EST; length=752bp
GACACTCAAGCGAGACAGAGAGCATCAAAATAGATGCTACTGAGAGAGAT
GCCGAAGAGAAAGGGAAGCAAAGCAGTTCATGACTCAGAAACCCTAATTT
CAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTTTGAAGAAGAAGAA
GAAGAACAGAAAGCCAAAGATCAACGGAAAGGGTTCTTCGCTTGTTATCT
TTTAACCTCCTTATGCCCCCGTTACAAAGGCCACACCTATATCGGATTCA
CTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGGTGAAATAAGGTGT
GGGGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAATGGTTTTATGCAT
TTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTTGAGTGGGCTTGGC
AGCATCCAATGGAATCACTGGCTGTAAGGCGGGCAGCTGCTACATTTAAA
TCCTTCTCTGGAGTTGCCAATAAAATCAAACTCGCATACACGATGCTCAA
CCTCCCTAACTGGGAGAGCTTGAACATCACGGTGAACTATTTTTCAACAA
AATACTCGAAACATTCTTCTAGTTGCCCAAACCTGCCAGAGCACATGAAG
GTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATACTGAAAGAGATGA
GGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAGGAGTACGATGAAGC
TAGTGAAACAGTGGAAGTTAGAGGAACCGCGGAATGTGACAATTATTTTC
AT
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