FC932323

Overview
NameFC932323
Unique NameFC932323
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932323_ssr139 microsatellite FC932323_ssr139:139..156. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14381 contig Ccv1_Contig14381:92..844. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_PICST (Structure-specific endonuclease subunit SLX1 OS=Pichia stipitis GN=SLX1 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCG-AVRTKKR--RPWEMVLCIYGFPTNVSALQFEWAWQHPMESLAVRR 432
            F+  YLL S  P+     YIG T +P RR+RQHNG+++ G A RTK+   RPW M+L +Y FP+ VSALQFE ++QH  E+  +++
Sbjct:   22 FYGVYLLQSE-PKPSSF-YIGSTPDPPRRLRQHNGDLKAGGAYRTKRAGFRPWRMLLVVYDFPSKVSALQFEHSFQHCHETRHIKQ 105          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_ASPOR (Structure-specific endonuclease subunit slx1 OS=Aspergillus oryzae GN=slx1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.963e-12
Identity = 40/84 (47.62%), Postives = 51/84 (60.71%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK-RRPWEMVLCIYGFPTNVSALQFE-----WAWQHPMES 417
            F+ CYLL S   +     YIG T +P RR+ QHNG  R GA +T   +RPWEMVL + GF +  +ALQF+     WAWQ P +S
Sbjct:   15 FYCCYLLRSTVRQTS--LYIGSTPHPSRRLAQHNGVSRGGARKTANDKRPWEMVLIVEGFMSRTAALQFDTIYTTWAWQKPGKS 96          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_NEUCR (Structure-specific endonuclease subunit SLX1 OS=Neurospora crassa GN=slx1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.126e-11
Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query:  187 FACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRTKK--RRPWEMVLCIYGFPTNVSALQFEWAWQHPMESL---AVRRAAA 441
            +  Y+L S  PR+    YIG T +P RR+ QHNG  + GA RT K   RPW MV  + GFP+ ++AL+FEWA  +P +SL   A +RA A
Sbjct:   17 YTVYILRSQ-PRHAS-LYIGSTPHPPRRLSQHNGLAKGGAYRTSKISLRPWNMVCLVSGFPSMIAALKFEWALNNPHKSLHIPAEKRAEA 104          
BLAST of FC932323 vs. ExPASy Swiss-Prot
Match: SLX1_NEOFI (Structure-specific endonuclease subunit slx1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=slx1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.533e-11
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1
Query:  184 FFACYLLTSLCPRYKGHTYIGFTVNPRRRIRQHNGEIRCGAVRT--KKRRPWEMVLCIYGFPTNVSALQFEWA 396
            F+ CYLL S         YIG T NP RR+ QHNG ++ GA RT  +K RPWEM+L + GF + ++ALQF+ A
Sbjct:   15 FYCCYLLRSTVRH--ASLYIGSTPNPARRLVQHNGVVKGGARRTAAEKLRPWEMLLVVEGFTSRLAALQFDSA 85          
The following BLAST results are available for this feature:
BLAST of FC932323 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
SLX1_PICST1.330e-1247.67Structure-specific endonuclease subunit SLX1 OS=Pi... [more]
SLX1_ASPOR2.963e-1247.62Structure-specific endonuclease subunit slx1 OS=As... [more]
SLX1_NEUCR1.126e-1146.67Structure-specific endonuclease subunit SLX1 OS=Ne... [more]
SLX1_NEOFI9.533e-1149.32Structure-specific endonuclease subunit slx1 OS=Ne... [more]

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Properties
Property NameValue
Genbank descriptionC34207D04EF PostHarveN Citrus clementina cDNA clone C34207D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932323 ID=FC932323; Name=FC932323; organism=Citrus clementina; type=EST; length=752bp
GACACTCAAGCGAGACAGAGAGCATCAAAATAGATGCTACTGAGAGAGAT
GCCGAAGAGAAAGGGAAGCAAAGCAGTTCATGACTCAGAAACCCTAATTT
CAAAGTCAAAAACTCTAGATCCAGTAAAAGATGATTTTGAAGAAGAAGAA
GAAGAACAGAAAGCCAAAGATCAACGGAAAGGGTTCTTCGCTTGTTATCT
TTTAACCTCCTTATGCCCCCGTTACAAAGGCCACACCTATATCGGATTCA
CTGTGAACCCGCGTCGTAGAATTAGGCAGCATAATGGTGAAATAAGGTGT
GGGGCAGTGAGGACGAAGAAAAGGCGCCCTTGGGAAATGGTTTTATGCAT
TTATGGTTTCCCAACAAATGTTTCAGCTCTTCAGTTTGAGTGGGCTTGGC
AGCATCCAATGGAATCACTGGCTGTAAGGCGGGCAGCTGCTACATTTAAA
TCCTTCTCTGGAGTTGCCAATAAAATCAAACTCGCATACACGATGCTCAA
CCTCCCTAACTGGGAGAGCTTGAACATCACGGTGAACTATTTTTCAACAA
AATACTCGAAACATTCTTCTAGTTGCCCAAACCTGCCAGAGCACATGAAG
GTCCAAGTACGTTCCATGGATGAACTTCCCTGCTATACTGAAAGAGATGA
GGTTTGTTAGGGGATGAAGACAGCCTGGGTGATGAGGAGTACGATGAAGC
TAGTGAAACAGTGGAAGTTAGAGGAACCGCGGAATGTGACAATTATTTTC
AT
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