FC932326

Overview
NameFC932326
Unique NameFC932326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A2_LEIIN (40S ribosomal protein S3a-2 OS=Leishmania infantum GN=LinJ35.0510 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.790e-24
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTXYFT 475
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT   +T
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYT 137          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A1_LEIIN (40S ribosomal protein S3a-1 OS=Leishmania infantum GN=LinJ35.0500 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.790e-24
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNE--EEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTXYFT 475
            +WYD+ AP+ F  R   KT+  +TQGT+IA++ L+ RVFE +L DL     EE AYRK+R   ++VQG+N+LT F  M  TTDK+ SL+RKW T +E  V+VKT   +T
Sbjct:   29 EWYDVVAPANFEKRQFAKTICNKTQGTRIAADVLRGRVFEANLADLNQSAGEEEAYRKVRFTVQEVQGRNLLTQFHSMEVTTDKMASLLRKWCTTMETTVEVKTADGYT 137          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_TETTH (40S ribosomal protein S3a OS=Tetrahymena thermophila GN=TTHERM_00047480 PE=3 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 7.148e-23
Identity = 51/103 (49.51%), Postives = 74/103 (71.84%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKT 460
            +WYD +AP  F  ++ GKTLVT++ G +IASE +K RV E +L DL  N  + A+RK++L  ++V G+N  T+F+G++ T D+L S++RKW TLIEA VD KT
Sbjct:   30 EWYDFRAPIPFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDKAWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKT 132          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A2_TRYCR (40S ribosomal protein S3a-2 OS=Trypanosoma cruzi GN=Tc00.1047053511001.9 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTXYFT 475
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT   +T
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVEAKTADGYT 136          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A1_TRYCR (40S ribosomal protein S3a-1 OS=Trypanosoma cruzi GN=Tc00.1047053503635.59 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.593e-22
Identity = 51/109 (46.79%), Postives = 74/109 (67.89%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDL--LNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTXYFT 475
            +WYD+ AP  F VR  GKT+  +TQGTKIA++ L+ RV+E +L DL     ++ AYRK++   ++VQG+N+LT F  M  T+D++  L+RKW T IEA V+ KT   +T
Sbjct:   28 EWYDVVAPKNFEVRQFGKTICNKTQGTKIAADYLRGRVYESNLADLNKTQGDDDAYRKVKFVVQEVQGRNLLTQFHSMEMTSDRVYFLLRKWCTTIEAAVETKTADGYT 136          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_NOSCE (40S ribosomal protein S1 OS=Nosema ceranae (strain BRL01) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.105e-15
Identity = 43/101 (42.57%), Postives = 66/101 (65.35%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL-NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDV 454
            +WY++KAP+ F     GKT+VT++   +  +  L  R F+++  DL  N EEHA RK   R  +V+GK+ +  F GM+ T+DK++ ++RKWHTLIEA  D+
Sbjct:   30 EWYNLKAPAIFPNNVCGKTMVTKSSNKQNLALLLIGRKFDINQADLTGNLEEHA-RKFSFRVNEVRGKDCIGVFDGMHMTSDKVKGIIRKWHTLIEAEKDI 129          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_GIALA (40S ribosomal protein S3a OS=Giardia lamblia GN=GL50803_16265 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.201e-15
Identity = 42/105 (40.00%), Postives = 66/105 (62.86%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLL--NEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            +WY + AP+ F+ R++G+T VT+T G ++A++ + HRV+EV+LGDL    E+ +   K  L+ + V     LTNF GM+ T  K  SL RK    I+ ++D+ TT
Sbjct:   26 EWYPVIAPAHFKSRHIGQTPVTKTAGLRVATDVINHRVYEVNLGDLNPGAEDLNGNTKFYLQTQLVSDGKCLTNFHGMDITRHKYGSLFRKGCDCIDVFMDIPTT 130          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_GUITH (40S ribosomal protein S3a OS=Guillardia theta PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.198e-11
Identity = 32/98 (32.65%), Postives = 55/98 (56.12%), Query Frame = 2
Query:  167 IKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKT 460
            + AP  F  + +GKTL+ +       +  + +++++VSL D+L +EE +      ++  +      T F G+  T DK+ SL++KWHTLIE  V+ KT
Sbjct:   29 VYAPDIFDSKLIGKTLIKKRNPAD-ENSSVDNKIYQVSLADILGKEEFSSINFNFKSLKIFNNECFTKFHGLTLTRDKICSLIKKWHTLIEVEVNFKT 125          
The following BLAST results are available for this feature:
BLAST of FC932326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A2_LEIIN3.790e-2449.5440S ribosomal protein S3a-2 OS=Leishmania infantum... [more]
RS3A1_LEIIN3.790e-2449.5440S ribosomal protein S3a-1 OS=Leishmania infantum... [more]
RS3A_TETTH7.148e-2349.5140S ribosomal protein S3a OS=Tetrahymena thermophi... [more]
RS3A2_TRYCR1.593e-2246.7940S ribosomal protein S3a-2 OS=Trypanosoma cruzi G... [more]
RS3A1_TRYCR1.593e-2246.7940S ribosomal protein S3a-1 OS=Trypanosoma cruzi G... [more]
RS3A_NOSCE1.105e-1542.5740S ribosomal protein S1 OS=Nosema ceranae (strain... [more]
RS3A_GIALA4.201e-1540.0040S ribosomal protein S3a OS=Giardia lamblia GN=GL... [more]
RS3A_GUITH8.198e-1132.6540S ribosomal protein S3a OS=Guillardia theta PE=3... [more]

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Properties
Property NameValue
Genbank descriptionC34207D07EF PostHarveN Citrus clementina cDNA clone C34207D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932326 ID=FC932326; Name=FC932326; organism=Citrus clementina; type=EST; length=476bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGANTACTTCACAT
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