FC932326

Overview
NameFC932326
Unique NameFC932326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length476
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_CANDC (40S ribosomal protein S1 OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.892e-34
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTS 130          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_CANAW (40S ribosomal protein S1 OS=Candida albicans (strain WO-1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.892e-34
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTS 130          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_CANAL (40S ribosomal protein S1 OS=Candida albicans GN=RPS1 PE=3 SV=3)

HSP 1 Score: 142.895 bits (359), Expect = 6.892e-34
Identity = 67/103 (65.05%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT+
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKTS 130          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_ARTSF (40S ribosomal protein S3a OS=Artemia sanfranciscana PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 6.892e-34
Identity = 73/105 (69.52%), Postives = 84/105 (80.00%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEE--HAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            DWYD+KAPS F  R++GKTLV RT GTKIAS+ LK RVFEVSL DL  E E   ++RK RL AE+VQG+ +LTNF GM+FTTDKLRSLV+KW TLIE  VDVKTT
Sbjct:   29 DWYDVKAPSLFTNRDIGKTLVNRTAGTKIASDSLKGRVFEVSLADLQGESEAERSFRKFRLIAEEVQGRYLLTNFHGMDFTTDKLRSLVKKWQTLIECSVDVKTT 133          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_CANTT (40S ribosomal protein S1 OS=Candida tropicalis (strain ATCC MYA-3404 / T1) GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.001e-34
Identity = 67/102 (65.69%), Postives = 84/102 (82.35%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKT 460
            DW+DIKAP+ F  RNVGKTL+ R+ G K A++GLK RVFEV L DL   E+H+YRKI+LR ++VQGKN+LTNF G++FT+DKLRSLVRKW +L+EA V VKT
Sbjct:   28 DWFDIKAPTTFENRNVGKTLINRSTGLKNAADGLKGRVFEVCLADLQGSEDHSYRKIKLRVDEVQGKNLLTNFHGLDFTSDKLRSLVRKWQSLVEANVTVKT 129          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_APLCA (40S ribosomal protein S3a OS=Aplysia californica GN=RPS3A PE=3 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 9.001e-34
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            +WYD+KAPS F VR +GKTLVTR+QGTKIAS+ LK RVFEVSL DL N+E   +RK +L AE+VQG+NVLTNF GM+ T DKL S+V+KW TLIEA VDVKTT
Sbjct:   29 EWYDVKAPSMFAVRQIGKTLVTRSQGTKIASDNLKGRVFEVSLADLQNDEV-TFRKFKLIAEEVQGRNVLTNFSGMSLTRDKLCSMVKKWQTLIEANVDVKTT 130          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_ANODA (40S ribosomal protein S3a OS=Anopheles darlingi PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 9.001e-34
Identity = 71/105 (67.62%), Postives = 85/105 (80.95%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEE--EHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            DWYD+KAP+ F+ R VGKTLV RTQGT+IAS+GLK RVFEVSL DL NE+  E ++RK +L AE V G++VL NF GM+ TTDKLRS+V+KW TLIE  VDVKTT
Sbjct:   29 DWYDVKAPNMFKNRQVGKTLVNRTQGTRIASDGLKGRVFEVSLADLQNEQDAERSFRKFKLIAESVNGRDVLCNFHGMDLTTDKLRSMVKKWQTLIECSVDVKTT 133          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_PODAN (40S ribosomal protein S1 OS=Podospora anserina GN=RPS1 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.176e-33
Identity = 67/106 (63.21%), Postives = 86/106 (81.13%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTXYF 472
            DWY IKAP+ F +R+VGKTLV RT G K A++ LK R+ EVSL DL  +E+HA+RK++LR ++VQGKN LTNF G++FT+DKLRSLVRKW TLIEA V V+TT ++
Sbjct:   28 DWYGIKAPAPFAIRDVGKTLVNRTTGLKNANDALKGRIVEVSLADLQKDEDHAFRKVKLRVDEVQGKNCLTNFHGLDFTSDKLRSLVRKWQTLIEANVTVQTTDHY 133          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_BRUMA (40S ribosomal protein S3a OS=Brugia malayi GN=Bm1_27225 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.535e-33
Identity = 72/103 (69.90%), Postives = 83/103 (80.58%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            +WYDIKAPS F V+++GKTLV RTQGTKIASEGLK RV+EVSLGD LN  E  +RK+RL  EDVQG+  LTNF GM  T DKL S+V+KWHTLIEA V VKT+
Sbjct:   26 EWYDIKAPSMFNVQHIGKTLVNRTQGTKIASEGLKGRVYEVSLGD-LNNAESEFRKMRLICEDVQGRTCLTNFHGMRLTRDKLCSIVKKWHTLIEANVAVKTS 127          
BLAST of FC932326 vs. ExPASy Swiss-Prot
Match: RS3A_CANGA (40S ribosomal protein S1 OS=Candida glabrata GN=RPS1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.005e-33
Identity = 68/103 (66.02%), Postives = 82/103 (79.61%), Query Frame = 2
Query:  155 DWYDIKAPSCFRVRNVGKTLVTRTQGTKIASEGLKHRVFEVSLGDLLNEEEHAYRKIRLRAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTT 463
            +WYDIKAPS F  RNVGKTLV ++ G K AS+ LK RV EV L DL   E+H++RK++LR +DVQGKN+LTNF GM+FT DKLRS+VRKW TLIEA V VKT+
Sbjct:   28 EWYDIKAPSTFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDHSFRKVKLRVDDVQGKNLLTNFHGMDFTADKLRSMVRKWQTLIEANVTVKTS 130          
The following BLAST results are available for this feature:
BLAST of FC932326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 158
Match NameE-valueIdentityDescription
RS3A_CANDC6.892e-3465.0540S ribosomal protein S1 OS=Candida dubliniensis (... [more]
RS3A_CANAW6.892e-3465.0540S ribosomal protein S1 OS=Candida albicans (stra... [more]
RS3A_CANAL6.892e-3465.0540S ribosomal protein S1 OS=Candida albicans GN=RP... [more]
RS3A_ARTSF6.892e-3469.5240S ribosomal protein S3a OS=Artemia sanfranciscan... [more]
RS3A_CANTT9.001e-3465.6940S ribosomal protein S1 OS=Candida tropicalis (st... [more]
RS3A_APLCA9.001e-3469.9040S ribosomal protein S3a OS=Aplysia californica G... [more]
RS3A_ANODA9.001e-3467.6240S ribosomal protein S3a OS=Anopheles darlingi PE... [more]
RS3A_PODAN1.176e-3363.2140S ribosomal protein S1 OS=Podospora anserina GN=... [more]
RS3A_BRUMA1.535e-3369.9040S ribosomal protein S3a OS=Brugia malayi GN=Bm1_... [more]
RS3A_CANGA2.005e-3366.0240S ribosomal protein S1 OS=Candida glabrata GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionC34207D07EF PostHarveN Citrus clementina cDNA clone C34207D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932326 ID=FC932326; Name=FC932326; organism=Citrus clementina; type=EST; length=476bp
GCTCTTCACTCAAAACGAACGAGCTAGGACTAGGTAGCAGCGGAGCCGTC
TCTTGAGCAGCAGCTGCACAAACATGGCTGTCGGGAAGAACAAGAGGATT
TCAAAGGGGAAGAAAGGAGGCAAGAAGAAGGCTGCTGATCCGTTTGCCAA
GAAGGACTGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATG
TTGGCAAGACTCTTGTTACCCGGACTCAGGGTACCAAGATTGCATCAGAA
GGTCTCAAGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGA
AGAAGAGCATGCTTACAGGAAGATCAGACTGAGAGCTGAAGATGTCCAAG
GGAAGAATGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAG
CTGAGGTCTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGA
TGTCAAGACCACTGANTACTTCACAT
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