FC932337

Overview
NameFC932337
Unique NameFC932337
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_HUMAN (Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1 PE=1 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 83/222 (37.39%), Postives = 113/222 (50.90%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQL--LIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  G+P  SD ++ T  +    P      +LL+ L+L+ DPYMR    +L         K G+ + G  V+KV++S +    K  +V     W   S+     L  L+      +PLS   G +GMPGLTAY GL E+   K G  V V+AA+GAVG +VGQ AKL GC VVG+ GS EKV  L+ K GFD  F       L+  LK+  P+
Sbjct:    2 VRTKTWTLKKHFVGYPTNSDFELKTAEL----PPLKNGEVLLEALFLTVDPYMRVAAKRL---------KEGDTMMGQQVAKVVESKNVALPKGTIVLASPGWTTHSISDGKDLEKLLTEWPDTIPLSLALGTVGMPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYLQ-KLGFDVVFNYKTVESLEETLKKASPD 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR1_CAVPO (Prostaglandin reductase 1 OS=Cavia porcellus GN=Ptgr1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 86/223 (38.57%), Postives = 119/223 (53.36%), Query Frame = 2
Query:   47 VSNKQVILSDYVTGFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDT---NVPLSYYTGILGMPGLTAYGGLYELSSPKKGGYVYVSAASGAVGQLVGQFAKLVGCHVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRCFPE 706
            V  K   L  +  G P +SD ++ T    +++P      +LL+ L+LS DPYMR    +L         K G  + G  V++V++S +  +    +V   + W     I   + L K+L      +PLS   G +GMPGLTAY GL E+   K G  V VSAA+GAVG +VGQ AKL GC VVG+AGS EK+  LK + GFD AF       L+ ALK+  P+
Sbjct:    2 VKAKSWTLKKHFQGKPTQSDFELKT----VELPPLKNGEVLLEALFLSVDPYMRIASKRL---------KEGAVMMGQQVARVVESKNSAFPAGSIVLAQSGWTT-HFISDGKGLEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK-QIGFDAAFNYKTVNSLEEALKKASPD 209          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR2_BOVIN (Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.811e-19
Identity = 63/181 (34.81%), Postives = 92/181 (50.83%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKGG--YVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNKFGFDDAFKL*ERTDLDAALKRC 697
            ++ LYLS DPYMR RM++     ++  ++  + + G GV  + +S H N+ K D V       +  +I    +L K+    V   LSY+ G +GMPGLT+  G+ E      G    + VS A+GA G L GQ  +L+GC  VVG  G+ EK   L ++ GFD A    E    +   K C
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGSDYITPWQLSQVVDGGGVGIIEESKHTNFMKGDFVTSFYWPWQTKVILDGNILEKVDPQLVDGHLSYFLGAIGMPGLTSLIGVQEKGHITAGSNQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGTPEKCLFLTSELGFDAAINYKEGNVAEQLHKLC 221          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR2_PONAB (Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.170e-17
Identity = 59/165 (35.76%), Postives = 86/165 (52.12%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKGG--YVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNKFGFDDA 649
            ++ LYLS DPYMR RM++     ++  ++  + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E      G    + VS A+GA G + GQ   L+GC  VVG  G+ EK  LL ++ GFD A
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHLLGCSRVVGICGTHEKCVLLTSELGFDAA 205          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR2_HUMAN (Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.314e-17
Identity = 58/165 (35.15%), Postives = 85/165 (51.52%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGLTSWEECSLIQSPQLLIKILDTNVP--LSYYTGILGMPGLTAYGGLYELSSPKKGG--YVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNKFGFDDA 649
            ++ LYLS DPYMR RM++     ++  ++  + + G G+  + +S H N  K D V       +  +I     L K+    V   LSY+ G +GMPGLT+  G+ E      G    + VS A+GA G + GQ    +GC  VVG  G+ EK  LL ++ GFD A
Sbjct:   41 VRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAA 205          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR2_MOUSE (Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.837e-16
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 2
Query:  170 LKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEECSLIQ-------SPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGG--YVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNKFGFDDA 649
            ++ LYLS DPYMR +M++     ++A ++  +   G G+  V +S H    K D V      W+  +++         PQL+      +  LSY+ G +GMPGLT+  G+ E      G    + VS A+GA G L GQ   L+GC  VVG  G++EK   L ++ GFD A
Sbjct:   41 VRTLYLSVDPYMRCKMNEDTGTDYLAPWQLAQVADGGGIGVVEESKHQKLTKGDFVTSFYWPWQTKAILDGNGLEKVDPQLV------DGHLSYFLGAIGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAA 205          
BLAST of FC932337 vs. ExPASy Swiss-Prot
Match: PTGR2_RAT (Prostaglandin reductase 2 OS=Rattus norvegicus GN=Ptgr2 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.399e-16
Identity = 63/199 (31.66%), Postives = 98/199 (49.25%), Query Frame = 2
Query:   86 GFPKESDMKIITGSINLKVPEGSKDTLLLKNLYLSCDPYMRGRMSKLDKPSFVASFKPGEPLSGYGVSKVLDSTHPNYKKDDLVWGL-TSWEECSLIQ-------SPQLLIKILDTNVPLSYYTGILGMPGLTAYGGLYELSSPKKGG--YVYVSAASGAVGQLVGQFAKLVGC-HVVGSAGSKEKVDLLKNKFGFDDA 649
            G P   + ++   S+   + EG    + ++ LYLS DPYMR +M++     ++A ++  +   G G+  + +S H    K D V      W+  +++         PQL+      +  LSY+ G +GMPGLT+  G+ E      G    + VS A+GA G L GQ   L+GC  VVG  G+ EK   L ++ GFD A
Sbjct:   16 GNPVAENFRVEEVSLPDTINEGQ---VRVRTLYLSVDPYMRCKMNEETGADYLAPWQLAQVADGGGLGVIEESKHQKLAKGDFVTSFYWPWQTKAILDGNGLEKVDPQLV------DGHLSYFLGAIGMPGLTSLIGVQEKGHVSAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTHEKCLFLTSELGFDAA 205          
The following BLAST results are available for this feature:
BLAST of FC932337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
PTGR1_HUMAN7.951e-2837.39Prostaglandin reductase 1 OS=Homo sapiens GN=PTGR1... [more]
PTGR1_CAVPO7.951e-2838.57Prostaglandin reductase 1 OS=Cavia porcellus GN=Pt... [more]
PTGR2_BOVIN8.811e-1934.81Prostaglandin reductase 2 OS=Bos taurus GN=PTGR2 P... [more]
PTGR2_PONAB2.170e-1735.76Prostaglandin reductase 2 OS=Pongo abelii GN=PTGR2... [more]
PTGR2_HUMAN6.314e-1735.15Prostaglandin reductase 2 OS=Homo sapiens GN=PTGR2... [more]
PTGR2_MOUSE1.837e-1634.50Prostaglandin reductase 2 OS=Mus musculus GN=Ptgr2... [more]
PTGR2_RAT2.399e-1631.66Prostaglandin reductase 2 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC34207E06EF PostHarveN Citrus clementina cDNA clone C34207E06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932337 ID=FC932337; Name=FC932337; organism=Citrus clementina; type=EST; length=722bp
GATCCAAAAACAAAATCTACATAAAAAAATGGCGGGTGAAGAAGCAGTGA
GCAACAAGCAGGTGATTCTGAGCGACTACGTGACAGGGTTTCCAAAAGAA
TCAGACATGAAGATAATAACAGGCTCAATAAACCTGAAGGTGCCAGAGGG
CTCAAAAGACACATTGCTTTTGAAGAATCTTTATCTTTCCTGTGATCCTT
ACATGAGAGGACGTATGAGCAAGCTTGATAAGCCTTCGTTTGTTGCCTCC
TTCAAGCCTGGCGAGCCTTTGAGCGGATATGGAGTGTCCAAAGTGTTGGA
TTCCACACATCCAAATTATAAGAAAGATGACTTGGTCTGGGGCTTAACCA
GTTGGGAGGAGTGCAGTCTCATCCAATCACCACAACTTCTGATTAAAATT
CTGGATACAAATGTGCCTCTGTCATACTATACTGGGATTCTTGGTATGCC
TGGTTTGACTGCATATGGTGGTTTATATGAGCTTTCCTCTCCTAAGAAAG
GAGGGTATGTCTATGTATCTGCAGCATCTGGAGCTGTTGGCCAGCTTGTT
GGGCAATTTGCGAAGTTGGTTGGTTGCCATGTTGTTGGAAGTGCCGGAAG
CAAAGAAAAGGTCGATCTGTTGAAGAACAAGTTTGGGTTTGATGACGCTT
TTAAACTATAGGAAAGAACAGACTTAGATGCAGCTCTTAAGAGGTGCTTT
CCTGAAGTATCGACATCTATTT
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