FC932338

Overview
NameFC932338
Unique NameFC932338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length734
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932338_ssr144 microsatellite FC932338_ssr144:144..155. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig591 contig Ccv1_Contig591:6..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-34
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2
Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            F+ RYC++LEE SFRGRTADF++M LFG   +T   L+G +            FL  +L  M+VYVWS+++P + ++F GL TF A +LPW L+G
Sbjct:   77 FVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF-----------FLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMG 160          

HSP 2 Score: 70.0922 bits (170), Expect = 2.472e-34
Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRL+TNFLFF  +   F F+M F
Sbjct:   14 PAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLF 77          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.876e-32
Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 2
Query:  413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            F+ RYC++LEE SFRGR ADF++M LFG   +T    +G +            FL  +L  M+VYVWS+++P + ++F GL  F A +LPW L+G
Sbjct:   77 FVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSLF-----------FLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMG 160          

HSP 2 Score: 68.1662 bits (165), Expect = 2.876e-32
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1
Query:  208 GTNRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414
            G  + P +TR Y  A ++TT    L+++SPF L  +P LV + +Q WRLIT FLFF  +   F F+M F
Sbjct:    9 GFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLF 77          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.436e-22
Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694
            +ARY   LE+  F  RTADFL+M++FG+     T+L+  +IP+    F     L  SL  M++Y+WS++ P  ++S  GL T  A YLPW +L
Sbjct:   76 IARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTPF-----LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAML 159          

HSP 2 Score: 55.0694 bits (131), Expect = 3.436e-22
Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 1
Query:  214 NRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396
            N  P IT+ Y T    TTV   L +++P ++ L P LV+K +Q WRLITN  F     ++F
Sbjct:    9 NSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINF 69          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22
Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 2
Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694
            +FL R+ +LLEE+SFRGR+AD+L+M +FG+  L    LI     + ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L
Sbjct:   75 YFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVIL 165          

HSP 2 Score: 69.3218 bits (168), Expect = 1.287e-12
Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF----SRTILQAS*REFLQGKDCRFLVHAFIW 495
            PI+T+ Y+T  +VT+V   L ++ P  L L+  LV   Y+FWRL TNF F+ ++ ++F FHM+F    SR + ++S     +G+   +L   F+W
Sbjct:   13 PIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESS----FRGRSADYL---FMW 100          

HSP 3 Score: 23.0978 bits (48), Expect = 1.287e-12
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3
Query:  186 MAQAVEDWYKQM 221
            MAQ  EDWYK +
Sbjct:    1 MAQPFEDWYKNL 12          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.318e-20
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            +ARY   LE+ +F  RTADFL+M++FGA  L    L    IP+L      I FL   +  M++YVWS++ P   +S  GL    + YLPW +LG
Sbjct:   76 IARYGVQLEKGAFEKRTADFLWMMIFGAISL----LALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLG 160          

HSP 2 Score: 49.6766 bits (117), Expect = 2.318e-20
Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1
Query:  214 NRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396
            N  P I++ Y T     TV C L I++P  L L+   V K +Q WRL T+F F  K  ++F
Sbjct:    9 NSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINF 69          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.020e-18
Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694
            +ARY  +LE+ +F  RTADFL+M++FGA  L    L+  +IP  +  F  I  +S     M++YVWS++NP   ++  GL    + YLPW +L
Sbjct:   76 IARYGVMLEKGAFDKRTADFLWMMIFGAISL----LVLSIIPLFNSFFLGIPMVS-----MLLYVWSRENPNAQINIYGLVQLRSFYLPWAML 159          

HSP 2 Score: 43.5134 bits (101), Expect = 2.020e-18
Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396
            P I++ Y T    TTV   L I+ P  L L   LV K ++ WRL+T+F F     + F
Sbjct:   12 PPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKF 69          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.776e-18
Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2
Query:  416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694
            +ARY  +LE+ +F  RTADFL+M++FGA  L    L+  +IP L+     +  +S     M+VYVWS++NP   ++  G+    A YLPWV+L
Sbjct:   76 IARYGVMLEKGAFDKRTADFLWMMIFGAISL----LVLSVIPQLNTYVLGLPMVS-----MLVYVWSRENPNAQINIYGILQLKAFYLPWVML 159          

HSP 2 Score: 40.817 bits (94), Expect = 5.776e-18
Identity = 20/58 (34.48%), Postives = 31/58 (53.45%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396
            P I++ Y T    TTV   L I++P  L L+   V K ++ WR+ T+F F     ++F
Sbjct:   12 PPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINF 69          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.297e-14
Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 2
Query:  404 ICFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            +C+FL  Y K LE  ++RGR+AD+L+ML+F   F +G  +              I FL   + + ++YVW + N    +SF     F A YLPWVL G
Sbjct:   74 MCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMA-----------LDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWG 160          

HSP 2 Score: 30.0314 bits (66), Expect = 4.297e-14
Identity = 15/51 (29.41%), Postives = 27/51 (52.94%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF 375
            PI+TR +  A+ +  +      I+   + L   LVV  +QFWR +T  +++
Sbjct:   11 PIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYY 61          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 4.297e-14
Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 2
Query:  407 CFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVL 691
            CFF+ +Y   LE++ +    AD+LY+L+  A        IGGMI         + FL ++L L + Y+W + N  + +SF     F A YLPWVL
Sbjct:   75 CFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLAN----IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVL 158          

HSP 2 Score: 35.8094 bits (81), Expect = 4.297e-14
Identity = 22/67 (32.84%), Postives = 31/67 (46.27%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF---RKMDLDFLFHMFF 414
            P  TR +LTA +V ++ C  D+I    L L  + V    Q WR +T+   F         FL + FF
Sbjct:   11 PRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFF 77          
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 1.041e-11
Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 2
Query:  410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697
            +FL +Y   LE  +F GR AD+L+MLLF    +  T L   M             L   L + ++YVW++ N  + +SF     F A YLPWV+LG
Sbjct:   77 YFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILG 161          

HSP 2 Score: 35.039 bits (79), Expect = 1.041e-11
Identity = 18/51 (35.29%), Postives = 25/51 (49.02%), Query Frame = 1
Query:  223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF 375
            P ITR +  A +   +   L +ISP  L L P   +  +Q WR IT   +F
Sbjct:   12 PAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYF 62          
The following BLAST results are available for this feature:
BLAST of FC932338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
DERL3_HUMAN2.472e-3446.32Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2[more]
DERL3_MOUSE2.876e-3243.16Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1[more]
DERL1_ARATH3.436e-2240.86Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1[more]
DERL2_DICDI5.150e-2250.53Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL1_ORYSJ2.318e-2041.49Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 P... [more]
DER11_MAIZE2.020e-1839.78Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2[more]
DER12_MAIZE5.776e-1840.86Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1[more]
DERL1_CAEEL4.297e-1436.73Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 S... [more]
DERL1_DROME4.297e-1435.79Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=... [more]
DERL1_HUMAN1.041e-1136.46Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC34207E07EF PostHarveN Citrus clementina cDNA clone C34207E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932338 ID=FC932338; Name=FC932338; organism=Citrus clementina; type=EST; length=734bp
GCCTCAAAAGACGAAAAGAATCGAAAGCTCTCTCCCGATCTATCTCCACA
ATCAAAACCCCCCCTTTTTTTTTCACCACTTCACTCAGAAATCTTTAAAT
TTTCAAAAAGAAAAAAAAAATCAGCACACTTTCAGGGCTCTAGAGATAGA
TAGATAAACCATATAGTCAAAAAAATTAAAAGAAAATGGCTCAAGCTGTT
GAAGATTGGTACAAACAGATGCCCTATCATCACCCGCACGTATCTCACAG
CCGCTATCGTCACCACCGTCGGCTGCTCTCTCGATATAATATCTCCTTTT
AATCTGTGCTTGCACCCAACGTTAGTAGTTAAGCATTATCAGTTTTGGCG
CCTTATCACCAATTTTCTCTTCTTCCGGAAAATGGATTTAGATTTTTTGT
TCCATATGTTTTTTTCTCGCACGATACTGCAAGCTTCTTGAAGAGAATTC
CTTCAGGGGAAGGACTGCAGATTTCTTGTACATGCTTTTATTTGGAGCCA
CTTTTCTAACCGGCACTGTTCTTATTGGGGGGATGATACCTTACTTGTCA
GAATCATTTGCAAAAATCATTTTCCTTAGCAATTCATTGACACTCATGAT
GGTTTATGTATGGAGCAAACAAAATCCTTTCATCCACATGAGTTTTTTGG
GCCTTTTTACATTTACAGCAGCTTACTTACCATGGGTGCTCTTGGGATCT
CAGTCTTCGTGGCGCTAGCGCTGGGTGGATTGCT
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