FC932338
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL3_HUMAN (Derlin-3 OS=Homo sapiens GN=DERL3 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.472e-34 Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 2 Query: 413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697 F+ RYC++LEE SFRGRTADF++M LFG +T L+G + FL +L M+VYVWS+++P + ++F GL TF A +LPW L+G Sbjct: 77 FVFRYCRMLEEGSFRGRTADFVFMFLFGGVLMTLLGLLGSLF-----------FLGQALMAMLVYVWSRRSPRVRVNFFGLLTFQAPFLPWALMG 160 HSP 2 Score: 70.0922 bits (170), Expect = 2.472e-34 Identity = 29/64 (45.31%), Postives = 41/64 (64.06%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414 P +TR Y A ++TT L+++SPF L +P LV + +Q WRL+TNFLFF + F F+M F Sbjct: 14 PAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLVTNFLFFGPLGFSFFFNMLF 77
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL3_MOUSE (Derlin-3 OS=Mus musculus GN=Derl3 PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.876e-32 Identity = 41/95 (43.16%), Postives = 59/95 (62.11%), Query Frame = 2 Query: 413 FLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697 F+ RYC++LEE SFRGR ADF++M LFG +T +G + FL +L M+VYVWS+++P + ++F GL F A +LPW L+G Sbjct: 77 FVFRYCRMLEEGSFRGRKADFVFMFLFGGVLMTLLGFLGSLF-----------FLGQALMAMLVYVWSRRSPHVRVNFFGLLNFQAPFLPWALMG 160 HSP 2 Score: 68.1662 bits (165), Expect = 2.876e-32 Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 1 Query: 208 GTNRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF 414 G + P +TR Y A ++TT L+++SPF L +P LV + +Q WRLIT FLFF + F F+M F Sbjct: 9 GFLQVPAVTRAYTAACVLTTAAVQLELLSPFQLYFNPHLVFRKFQVWRLITTFLFFGPLGFGFFFNMLF 77
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_ARATH (Derlin-1 OS=Arabidopsis thaliana GN=DER1 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 3.436e-22 Identity = 38/93 (40.86%), Postives = 56/93 (60.22%), Query Frame = 2 Query: 416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694 +ARY LE+ F RTADFL+M++FG+ T+L+ +IP+ F L SL M++Y+WS++ P ++S GL T A YLPW +L Sbjct: 76 IARYGVQLEKGPFERRTADFLWMMIFGSF----TLLVLSVIPFFWTPF-----LGVSLVFMLLYLWSREFPNANISLYGLVTLKAFYLPWAML 159 HSP 2 Score: 55.0694 bits (131), Expect = 3.436e-22 Identity = 25/61 (40.98%), Postives = 35/61 (57.38%), Query Frame = 1 Query: 214 NRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396 N P IT+ Y T TTV L +++P ++ L P LV+K +Q WRLITN F ++F Sbjct: 9 NSLPPITKAYGTLCFFTTVATQLGLVAPVHIALIPELVLKQFQIWRLITNLFFLGGFSINF 69
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 5.150e-22 Identity = 48/95 (50.53%), Postives = 72/95 (75.79%), Query Frame = 2 Query: 410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694 +FL R+ +LLEE+SFRGR+AD+L+M +FG+ L LI + ++ K++FL+ S+ M++YVWS++NP +H+SFLGLFTF+A YLPWV+L Sbjct: 75 YFLVRHSRLLEESSFRGRSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVIL 165 HSP 2 Score: 69.3218 bits (168), Expect = 1.287e-12 Identity = 35/95 (36.84%), Postives = 57/95 (60.00%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDFLFHMFF----SRTILQAS*REFLQGKDCRFLVHAFIW 495 PI+T+ Y+T +VT+V L ++ P L L+ LV Y+FWRL TNF F+ ++ ++F FHM+F SR + ++S +G+ +L F+W Sbjct: 13 PIVTKIYMTGCVVTSVSVYLGLVGPLRLYLNFPLVFGKYEFWRLFTNFFFYDEIGMNFFFHMYFLVRHSRLLEESS----FRGRSADYL---FMW 100 HSP 3 Score: 23.0978 bits (48), Expect = 1.287e-12 Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = 3 Query: 186 MAQAVEDWYKQM 221 MAQ EDWYK + Sbjct: 1 MAQPFEDWYKNL 12
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_ORYSJ (Derlin-1 OS=Oryza sativa subsp. japonica GN=DER1 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.318e-20 Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 2 Query: 416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697 +ARY LE+ +F RTADFL+M++FGA L L IP+L I FL + M++YVWS++ P +S GL + YLPW +LG Sbjct: 76 IARYGVQLEKGAFEKRTADFLWMMIFGAISL----LALSAIPFLD-----IYFLGVPMVSMLLYVWSREYPNSQISMYGLVQLRSFYLPWAMLG 160 HSP 2 Score: 49.6766 bits (117), Expect = 2.318e-20 Identity = 24/61 (39.34%), Postives = 33/61 (54.10%), Query Frame = 1 Query: 214 NRCPIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396 N P I++ Y T TV C L I++P L L+ V K +Q WRL T+F F K ++F Sbjct: 9 NSLPPISKAYGTLCFFATVLCQLQILNPPFLALYYPFVFKKFQIWRLFTSFFFLGKFSINF 69
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER11_MAIZE (Derlin-1.1 OS=Zea mays GN=DER1.1 PE=2 SV=2) HSP 1 Score: 68.5514 bits (166), Expect = 2.020e-18 Identity = 37/93 (39.78%), Postives = 56/93 (60.22%), Query Frame = 2 Query: 416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694 +ARY +LE+ +F RTADFL+M++FGA L L+ +IP + F I +S M++YVWS++NP ++ GL + YLPW +L Sbjct: 76 IARYGVMLEKGAFDKRTADFLWMMIFGAISL----LVLSIIPLFNSFFLGIPMVS-----MLLYVWSRENPNAQINIYGLVQLRSFYLPWAML 159 HSP 2 Score: 43.5134 bits (101), Expect = 2.020e-18 Identity = 22/58 (37.93%), Postives = 30/58 (51.72%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396 P I++ Y T TTV L I+ P L L LV K ++ WRL+T+F F + F Sbjct: 12 PPISKAYGTLCFFTTVLVQLQILHPLFLYLDYPLVFKKFEIWRLLTSFFFLAPFSMKF 69
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DER12_MAIZE (Derlin-1.2 OS=Zea mays GN=DER1.2 PE=2 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 5.776e-18 Identity = 38/93 (40.86%), Postives = 57/93 (61.29%), Query Frame = 2 Query: 416 LARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLL 694 +ARY +LE+ +F RTADFL+M++FGA L L+ +IP L+ + +S M+VYVWS++NP ++ G+ A YLPWV+L Sbjct: 76 IARYGVMLEKGAFDKRTADFLWMMIFGAISL----LVLSVIPQLNTYVLGLPMVS-----MLVYVWSRENPNAQINIYGILQLKAFYLPWVML 159 HSP 2 Score: 40.817 bits (94), Expect = 5.776e-18 Identity = 20/58 (34.48%), Postives = 31/58 (53.45%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFFRKMDLDF 396 P I++ Y T TTV L I++P L L+ V K ++ WR+ T+F F ++F Sbjct: 12 PPISKAYGTLCFFTTVLVRLHILNPLFLYLYYPRVFKKFEVWRIFTSFFFLGPFSINF 69
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_CAEEL (Derlin-1 OS=Caenorhabditis elegans GN=cup-2 PE=1 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.297e-14 Identity = 36/98 (36.73%), Postives = 52/98 (53.06%), Query Frame = 2 Query: 404 ICFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697 +C+FL Y K LE ++RGR+AD+L+ML+F F +G + I FL + + ++YVW + N +SF F A YLPWVL G Sbjct: 74 MCYFLYNYSKALESETYRGRSADYLFMLIFNWFFCSGLCMA-----------LDIYFLLEPMVISVLYVWCQVNKDTIVSFWFGMRFPARYLPWVLWG 160 HSP 2 Score: 30.0314 bits (66), Expect = 4.297e-14 Identity = 15/51 (29.41%), Postives = 27/51 (52.94%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF 375 PI+TR + A+ + + I+ + L LVV +QFWR +T +++ Sbjct: 11 PIVTRYWFLASTIIPLLGRFGFINVQWMFLQWDLVVNKFQFWRPLTALIYY 61
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_DROME (Derlin-1 OS=Drosophila melanogaster GN=CG10908 PE=2 SV=1) HSP 1 Score: 61.6178 bits (148), Expect = 4.297e-14 Identity = 34/95 (35.79%), Postives = 50/95 (52.63%), Query Frame = 2 Query: 407 CFFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVL 691 CFF+ +Y LE++ + AD+LY+L+ A IGGMI + FL ++L L + Y+W + N + +SF F A YLPWVL Sbjct: 75 CFFIVQYSSKLEKDQYSRSPADYLYLLIVSAVLAN----IGGMI-------FNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFKAMYLPWVL 158 HSP 2 Score: 35.8094 bits (81), Expect = 4.297e-14 Identity = 22/67 (32.84%), Postives = 31/67 (46.27%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF---RKMDLDFLFHMFF 414 P TR +LTA +V ++ C D+I L L + V Q WR +T+ F FL + FF Sbjct: 11 PRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQLWRCMTSLFVFPISSNTAFHFLINCFF 77
BLAST of FC932338 vs. ExPASy Swiss-Prot
Match: DERL1_HUMAN (Derlin-1 OS=Homo sapiens GN=DERL1 PE=1 SV=1) HSP 1 Score: 54.299 bits (129), Expect = 1.041e-11 Identity = 35/96 (36.46%), Postives = 49/96 (51.04%), Query Frame = 2 Query: 410 FFLARYCKLLEENSFRGRTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLG 697 +FL +Y LE +F GR AD+L+MLLF + T L M L L + ++YVW++ N + +SF F A YLPWV+LG Sbjct: 77 YFLYQYSTRLETGAFDGRPADYLFMLLFNWICIVITGLAMDMQ-----------LLMIPLIMSVLYVWAQLNRDMIVSFWFGTRFKACYLPWVILG 161 HSP 2 Score: 35.039 bits (79), Expect = 1.041e-11 Identity = 18/51 (35.29%), Postives = 25/51 (49.02%), Query Frame = 1 Query: 223 PIITRTYLTAAIVTTVGCSLDIISPFNLCLHPTLVVKHYQFWRLITNFLFF 375 P ITR + A + + L +ISP L L P + +Q WR IT +F Sbjct: 12 PAITRYWFAATVAVPLVGKLGLISPAYLFLWPEAFLYRFQIWRPITATFYF 62 The following BLAST results are available for this feature:
BLAST of FC932338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932338 ID=FC932338; Name=FC932338; organism=Citrus clementina; type=EST; length=734bpback to top |