FC932346

Overview
NameFC932346
Unique NameFC932346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 74/212 (34.91%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            RL    +  +GV+    N + +V  G  SE+  +  +   T++I   +  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +G   ND     G+ T  P
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRGLDSETKENIVQILGTELI---EAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGP 212          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.814e-22
Identity = 74/212 (34.91%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQ-TVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            RL    +  +GV+    N + +V  G  SE+  +  +   T++I   +  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE  R+  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +G   ND     G+ T  P
Sbjct:    5 RLSIFGTDNIGVYIYTNNKYTVVPRGLDSETKENIVQILGTELI---EAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGP 212          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.287e-22
Identity = 70/210 (33.33%), Postives = 99/210 (47.14%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            R  F  S  VGVF++ T+   L+     +       AEL   IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +     V    GTVN G+ ++G+G          G DT  P
Sbjct:    3 RASFAGSPYVGVFARATDDVLLLRSDVDDDTADAMAAELD--IPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGP 208          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 72/212 (33.96%), Postives = 113/212 (53.30%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIG-GSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            RL    +  +GV+    N + ++  G  SE+  +  +   T+++   +  I  + ++G    GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E+II + LGVE + R  +A  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +G   ND     G+ T  P
Sbjct:    5 RLSVFGTDNIGVYIYTNNKYTIIPRGLDSETKENIAQVLGTELL---EAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGP 212          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 64/210 (30.48%), Postives = 104/210 (49.52%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            M   L +E    +G+F+++     +V    S  + +  +  L   + +VKT + G+ IIG L  GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L + + +P+  GT+N GS ++G G   N      G +T
Sbjct:    1 MIRTLAYEGDPHIGIFTRVLEDIAVVPPEASADYCAALKEALG--VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLANSTGYLAGIET 204          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.322e-21
Identity = 67/201 (33.33%), Postives = 104/201 (51.74%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            +GVF+  T    LV         +  E E+ DV  V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R T+AG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++G+G   N      GS+T  P
Sbjct:   13 IGVFATCTEDVVLVPPLTKPEVCALLE-EVLDV-RVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGP 205          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 65/203 (32.02%), Postives = 99/203 (48.77%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            +GV+  + +   L+ +G    F  T   +L   + V  + TSI   R+IG LC+ N  G+LLP T    E   L+  L  +V V  ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ +AG    G     +N G  +HP    ED+   S L  V +   ++N G   + +G   N+     GS T  P
Sbjct:   14 IGVYISVNDNTILLPMG----FAKTKAEKLAKYLGVNYLFTSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGP 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.450e-20
Identity = 73/219 (33.33%), Postives = 114/219 (52.05%), Query Frame = 2
Query:   59 MATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPV--VKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVA-GTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            M  R  F     +GV +  T    L+ I   +   +    E+++V+    ++T+IGG+ ++G L V NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   T+A    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  +GA    N   A  G DT  P
Sbjct:    3 MIIRKYFSGIPTIGVLALTTEEITLLPIFLDKDDVN----EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGP 216          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_THEAC (Translation initiation factor 6 OS=Thermoplasma acidophilum GN=eif6 PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.884e-20
Identity = 59/198 (29.80%), Postives = 102/198 (51.52%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            +G+++K  +    + +   E   + F+  L   + V + SI  + +IG + V N NGL++P+ +    L  L     D   V +++++++A+GN I  NDH A+ H +    + + I D LGVE  R T+   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA    N      G DT
Sbjct:   13 IGIYAKAWDDVAFITMMADEKTVADFQEVLQ--VDVRRISIDNSSLIGTMMVMNSNGLIVPYGSEITGLGDL-----DGRNVLQLKDKINAIGNDIIANDHGAIIHKNFSNRSRKEIEDTLGVETIRTTIGNILTVGSAGILTSKGMLVNPETDDDELEFLRDFFKVSVKSGTANFGSIYVGASIVANSKGVLVGKDT 203          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_METHJ (Translation initiation factor 6 OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.311e-19
Identity = 59/198 (29.80%), Postives = 101/198 (51.01%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            +GVF+++ +   +V     E   + +E  L   + +V+T+I  + IIG L VGN NGL++    T++E+     +L +   +  +EE ++A GN I  NDH A  H ++D E  + ++D L V V   T+     VG     +N G +V P T+  ++  L  +  +P+  GTV  G+ ++G G   N +    G  T
Sbjct:   13 IGVFTRVFDDIAVVPPDVPEEVTTRYEEALK--VEIVRTTIQRSPIIGSLLVGNNNGLVITGMATEEEIA----TLSEYRDLMLLEEGMNAAGNIILANDHFAAVHPEMDEEFMDALSDFLKVPVIPLTLGDVKTVGMAAVATNSGVVVSPRTTPGEIQRLEQVCSLPVGKGTVTMGNAMVGTGLVANRYGYLAGVGT 204          
The following BLAST results are available for this feature:
BLAST of FC932346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_SULIK4.814e-2234.91Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIA4.814e-2234.91Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_HALWD6.287e-2233.33Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_SULSO8.211e-2233.96Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_METPE2.389e-2130.48Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_METAC5.322e-2133.33Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_NITMS3.450e-2032.02Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_METJA3.450e-2033.33Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_THEAC5.884e-2029.80Translation initiation factor 6 OS=Thermoplasma ac... [more]
IF6_METHJ1.311e-1929.80Translation initiation factor 6 OS=Methanospirillu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207F05EF PostHarveN Citrus clementina cDNA clone C34207F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932346 ID=FC932346; Name=FC932346; organism=Citrus clementina; type=EST; length=705bp
GTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAAT
TTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGT
GTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTC
TGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAACAGATGTTATTCCTG
TTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTT
GGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGAGCT
TCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTATTG
AAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATGTT
GCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCAGA
TGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATATCCTTG
TTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTCAT
ACATCCATTGAAGACTTGGATGAACTCTCTACACTCTCGCAAGTACCTTT
GGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTTTA
CTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACACGGCAACCGAAC
TCTCT
back to top