FC932346

Overview
NameFC932346
Unique NameFC932346
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length705
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_PYRAE (Translation initiation factor 6 OS=Pyrobaculum aerophilum GN=eif6 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.712e-19
Identity = 60/166 (36.14%), Postives = 92/166 (55.42%), Query Frame = 2
Query:  200 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V +  I  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVG+    ++RG LV P  + +DL +LS   +V +  GTVNRG   +  G  VND  A  G +T  P
Sbjct:   48 VARFTVARSPLLGIFTVVNDNGVLLPPLVLEEEVR-LFKALGLNVDI--INTKYTAISNLILAGNKVALVSPLLEPSARKVVADVLGVEVIVDTIAGNPLVGALAVLNSRGLLVAPEATDDDLKKLSEYFKVRVDVGTVNRGKSFLRGGIVVNDNGALVGDETAGP 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_PYRAR (Translation initiation factor 6 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.236e-19
Identity = 59/166 (35.54%), Postives = 90/166 (54.22%), Query Frame = 2
Query:  200 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            V + ++  + ++G   V N NG+LLP    ++E++ L  +L   V V  +  + +A+ N I   + VAL    L+    +++ADVLGVEV   T+AGN LVGS    ++RG LV P  + EDL +L+   +     GTVN+G   +  G  VND  A  G +T  P
Sbjct:   48 VARLTVAKSPLLGIFTVVNDNGVLLPPMVLEEEIR-LFKALGLNVEV--LNTKYTAISNLILAGNKVALVSPLLEPSVRKVVADVLGVEVIVDTIAGNPLVGSLAVLNSRGVLVAPEATDEDLKKLAEYFKAKTDLGTVNKGKSFLRGGIVVNDHGALVGDETAGP 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.920e-19
Identity = 53/163 (32.52%), Postives = 87/163 (53.37%), Query Frame = 2
Query:  209 TSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            TS+   R++G L V N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   IIAD LG+EV ++ +AG   VG+    ++ GG++HP T  ED+  +S +  V +   T+N G   + +G   N  +   GS T  P
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGP 210          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_TRYCR (Eukaryotic translation initiation factor 6 (Fragment) OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.981e-19
Identity = 41/73 (56.16%), Postives = 56/73 (76.71%), Query Frame = 2
Query:  470 FRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            FR ++A N LVGSY   +N+G +VHP T  +D+DE+++L QVP+VAGT+NRG+  IG+G  VNDW AFCG +T
Sbjct:    4 FRTSIAENALVGSYAVVNNKGCMVHPKTPAQDMDEIASLLQVPVVAGTINRGNAAIGSGLVVNDWAAFCGLNT 76          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 58/198 (29.29%), Postives = 93/198 (46.97%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            +GV+    + F L+     E         L+  +   + S+ G R++G    GN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +A   L +   + IAD LGVE  + ++     VGS    +NRG  + P  + E++  +    +V     TVNRG   +  G   N   A  G DT
Sbjct:   15 IGVYIFANDRFALIPYDAPEKLDRKIAENLS--VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDT 209          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_HALS3 (Translation initiation factor 6 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.506e-19
Identity = 60/210 (28.57%), Postives = 98/210 (46.67%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            R  F  S  +GVF++ T +  LV     + F  +   EL   +P V+T++GG+  +G L  GN +GLL+ +   ++E   +  +    V V  +   ++A GN +  ND  A  H+ L  +    + + L V   R  +AG   VG+    +  G L HP  +  +L+ +     V    GTVN G+ ++G+G    D     G DT  P
Sbjct:    3 RAAFRGSAYIGVFARATESCVLVRPDLDDDFVDSIADELG--VPAVQTTVGGSSTVGSLAAGNSSGLLVSNRIRERERDRIEAA---GVTVGELPGAVNAAGNVVVANDDGAYVHSGLSDDAVAAVEETLDVSATRGQLAGVDTVGTAAVATTDGVLCHPKATDAELERIEETLGVYADVGTVNYGAPLVGSGLVAADDGYLVGDDTTGP 207          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_THEVO (Translation initiation factor 6 OS=Thermoplasma volcanium GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 61/212 (28.77%), Postives = 104/212 (49.06%), Query Frame = 2
Query:   53 VIMATRLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            VI  T +M   S  +G+++K  +    +     E   + F   L   + + + SI G+ +IG +   N NG++LP+ +    L  +     D   V  ++++++A+GN I  NDH A+ H     +  + I D LGVE  R ++   + VGS    +++G LV+P T  ++L+ L    +V + +GT N GS  +GA    N      G DT
Sbjct:    3 VIRKTSVM--RSSFIGIYAKAWDDVAFITKMADEKTVNEFREVLQ--VDIKRISIDGSTLIGTMIAVNSNGIVLPYGSNIDGLDGI-----DGRNVLYLKDKINAVGNDIIANDHGAIIHKAFSNKARKEIEDTLGVETIRTSIGNILTVGSASVLTSKGMLVNPETDDDELEFLKDFFKVSVKSGTANFGSIYVGASIVANSKGILVGRDT 205          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.497e-19
Identity = 66/213 (30.99%), Postives = 103/213 (48.36%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I    + G L VGN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +A ++L+R+    I++ LGVE   + +    + GS    +++GG++HP  S ++  EL  + +V     TVN G   I +G   N+     G  T  P
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGP 213          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.110e-18
Identity = 64/210 (30.48%), Postives = 98/210 (46.67%), Query Frame = 2
Query:   68 RLMFENSCEVGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDTRQP 697
            R  F  S  VGVF++  +   LV     E        EL    P++ T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +     V    GT+N G+ +IG+G    D     G DT  P
Sbjct:    3 RATFTGSSYVGVFARAIDDLLLVRPDVDEELADALGEEL-GAEPLL-TTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGP 208          
BLAST of FC932346 vs. ExPASy Swiss-Prot
Match: IF6_METMJ (Translation initiation factor 6 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.449e-18
Identity = 63/198 (31.82%), Postives = 96/198 (48.48%), Query Frame = 2
Query:   95 VGVFSKLTNAFCLVAIGGSESFYSTFEAELTDVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTVAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLSQVPLVAGTVNRGSEVIGAGFTVNDWTAFCGSDT 688
            +GV++++     +V  G    F +    EL   + +V T I G+ IIG L  GN  GL++    TD+EL      L +   V  ++  ++A GN I  ND VA  H ++  +  E I   L V V R T+ G   VG     +N+G LVHP  +  ++  L  +  +P+  G+VN GS ++G G   N      GS T
Sbjct:   13 IGVYARVFEDIAIVYPGAPAEFTAALARELD--VEIVSTFIQGSSIIGSLVSGNSQGLVVSGLATDEELA----VLSEYRDVFLLKGPMNAAGNIILANDCVAAVHPEMQIDVAEEIGSFLEVPVVRLTLGGIKTVGMAGFATNKGILVHPRANDTEIANLERIVDLPIGLGSVNMGSGLVGTGLLANSKGYVAGSVT 204          
The following BLAST results are available for this feature:
BLAST of FC932346 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PYRAE1.712e-1936.14Translation initiation factor 6 OS=Pyrobaculum aer... [more]
IF6_PYRAR2.236e-1935.54Translation initiation factor 6 OS=Pyrobaculum ars... [more]
IF6_CENSY2.920e-1932.52Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_TRYCR4.981e-1956.16Eukaryotic translation initiation factor 6 (Fragme... [more]
IF6_THEPD6.506e-1929.29Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_HALS36.506e-1928.57Translation initiation factor 6 OS=Halobacterium s... [more]
IF6_THEVO8.497e-1928.77Translation initiation factor 6 OS=Thermoplasma vo... [more]
IF6_STAMF8.497e-1930.99Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_HALLT1.110e-1830.48Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_METMJ1.449e-1831.82Translation initiation factor 6 OS=Methanoculleus ... [more]

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Properties
Property NameValue
Genbank descriptionC34207F05EF PostHarveN Citrus clementina cDNA clone C34207F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932346 ID=FC932346; Name=FC932346; organism=Citrus clementina; type=EST; length=705bp
GTCTTGTGCTTTGATTCGGTCCATCTTTTAATCGGTTCAATTCTGTTAAT
TTGTAATCATGGCAACCAGACTTATGTTTGAGAATTCGTGTGAGGTTGGT
GTGTTTTCCAAGCTCACTAATGCTTTTTGCTTGGTCGCAATTGGAGGTTC
TGAGAGCTTCTACAGCACATTTGAGGCGGAGTTAACAGATGTTATTCCTG
TTGTTAAAACATCAATTGGTGGCAACAGGATTATCGGGCGGCTTTGTGTT
GGTAACAAAAATGGGCTTCTCTTGCCACACACAACCACAGACCAAGAGCT
TCAACACTTGAGGAATAGTCTACCTGATCAAGTTGTTGTCCAGCGTATTG
AAGAGAGGCTATCTGCTCTGGGAAATTGCATAGCATGCAATGACCATGTT
GCTCTTGCACACACAGATCTTGACAGGGAAACGGAGGAAATTATTGCAGA
TGTTCTTGGAGTAGAAGTTTTTAGGCAGACAGTTGCCGGTAATATCCTTG
TTGGCAGTTACTGTTCCTTCAGCAACAGGGGTGGCTTGGTCCACCCTCAT
ACATCCATTGAAGACTTGGATGAACTCTCTACACTCTCGCAAGTACCTTT
GGTTGCTGGCACTGTGAACCGTGGAAGTGAAGTGATAGGTGCTGGGTTTA
CTGTGAATGACTGGACAGCATTCTGTGGGTCAGACACACGGCAACCGAAC
TCTCT
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