FC932366

Overview
NameFC932366
Unique NameFC932366
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length668
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9407 contig Ccv1_Contig9407:2..669. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT13_SOLLC (Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.289e-39
Identity = 82/147 (55.78%), Postives = 97/147 (65.99%), Query Frame = 1
Query:  217 AVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNT 657
            ++++ YLLFSAYLVF MQLGFAMLCAGSVRAKN MNIMLTNV+D                    SN FIG   FALK  P+S++DYS+FLYQW               ERTQF AYL++S FLTGFVYPVV+HW WS +GW S ++T
Sbjct:   12 SINAIYLLFSAYLVFVMQLGFAMLCAGSVRAKNAMNIMLTNVVDAVVGSLSYYLFGFAFAFGD-SNPFIGASYFALKDIPSSSYDYSFFLYQWAFAIAVAGITSGSIAERTQFTAYLVFSFFLTGFVYPVVAHWLWSSNGWLSPNST 157          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT1_CAEEL (Putative ammonium transporter 1 OS=Caenorhabditis elegans GN=amt-1 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 5.485e-17
Identity = 48/152 (31.58%), Postives = 73/152 (48.03%), Query Frame = 1
Query:  220 VDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNG---FIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGWASASNTGDL 666
            V+S +L   A ++F MQ GFA L AG+VR+KNT NI++ N+LD                      G   F+G   F L  F     DY  F +Q+               ER +F+ Y+ Y + ++ F+YPV++HW W+ +GW +   T  +
Sbjct:   29 VNSFFLCSMALIIFFMQCGFAYLEAGAVRSKNTTNILIKNLLDSCICIIGYWAIGWALAYGDSGEGVNLFVGHSQFFLSGFS----DYPRFFFQYVFSATAATIVSGAVAERCEFITYVTYCTVISTFIYPVLTHWGWTENGWMAKGITSGI 176          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT3_DICDI (Ammonium transporter 3 OS=Dictyostelium discoideum GN=amtC PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.921e-16
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 1
Query:  214 YAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPS-NGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGW 639
            + +D++++L +A LVF MQ GF ML AG VRAKNT +I+L N+++                    + N F+G  NF L  +      Y+Y++ QW               ER Q   Y++++   T  +YP V+HW WS +GW
Sbjct:   22 FYMDTSWVLDAANLVFFMQAGFGMLEAGMVRAKNTKSILLKNLINTAICAISYYCVGHSFAYGKVNPNSFVGFGNFFLMDYT----HYAYWMIQWAYAATATTIATGAMAERLQLHCYILFTLVQTILIYPFVAHWIWSQNGW 160          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: AMT2_DICDI (Ammonium transporter 2 OS=Dictyostelium discoideum GN=amtB PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.305e-15
Identity = 47/154 (30.52%), Postives = 73/154 (47.40%), Query Frame = 1
Query:  187 INNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXT---PSNGFIGRHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGW 639
            +N      + AVD  ++L + YLVF MQ GF ML AG VRAKN  +I++ +++D                       SN  IG  +F L ++     + S+F +QW               ER    + L+Y+  ++ F+YP+ +HW WS +GW
Sbjct:    6 LNGTKEGLSAAVDDMWVLNATYLVFYMQAGFCMLEAGVVRAKNAKSIIMKSIIDTAIGSLLFWALGFGLAFGNADKASNPVIGTSHFFLINYQ----NLSFFAFQWAFCATSITIVSGSLAERVHVTSCLVYTIVMSAFIYPLSAHWVWSYNGW 155          
BLAST of FC932366 vs. ExPASy Swiss-Prot
Match: Y108_SYNY3 (Putative ammonium transporter sll0108 OS=Synechocystis sp. (strain PCC 6803) GN=sll0108 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.276e-13
Identity = 45/178 (25.28%), Postives = 69/178 (38.76%), Query Frame = 1
Query:  133 NATDATSAASLICSQLEAINNKFSDTAYAVDSTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDXXXXXXXXXXXXXXXXXXTPSNGFIG---------RHNFALKSFPTSNFDYSYFLYQWXXXXXXXXXXXXXXXERTQFVAYLIYSSFLTGFVYPVVSHWFWSVDGW 639
            NA        ++   +E +N   +     +++ ++L +A LV  M  GF ML  G  R KN +NI+  N++                   +  N F+G           N+ L  FP       +FL+Q                ER +F  +LI+S  L G  YP+  HW W   GW
Sbjct:   59 NAAAIAQDTEIVNITVETVNENVATLQGTLNAIWILIAAILVIFMNAGFGMLETGLCRQKNAVNILTKNLIVFALATIAYWAIGFSLMFGSSGNPFVGFGGFFLSGDHTNYGLSPFPEGLPVAVFFLFQVAFSATAATIVSGAVAERIKFNEFLIFSVLLVGIAYPITGHWVWDAGGW 236          
The following BLAST results are available for this feature:
BLAST of FC932366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AMT13_SOLLC2.289e-3955.78Ammonium transporter 1 member 3 OS=Solanum lycoper... [more]
AMT1_CAEEL5.485e-1731.58Putative ammonium transporter 1 OS=Caenorhabditis ... [more]
AMT3_DICDI7.921e-1632.87Ammonium transporter 3 OS=Dictyostelium discoideum... [more]
AMT2_DICDI2.305e-1530.52Ammonium transporter 2 OS=Dictyostelium discoideum... [more]
Y108_SYNY36.276e-1325.28Putative ammonium transporter sll0108 OS=Synechocy... [more]

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Properties
Property NameValue
Genbank descriptionC34207H02EF PostHarveN Citrus clementina cDNA clone C34207H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932366 ID=FC932366; Name=FC932366; organism=Citrus clementina; type=EST; length=668bp
GGTCCTTCTTGAAACAAAAACTGTAAAGTTTGACTTTTCAAACTCTTTCA
AATCTCAGGCAACCCAAGGTGGGAAGCCATGGCAACGTCCCTGAGTTGTT
CAGCGGACCAACTCGCCAGCTTCTTTGGCCCCAACGCCACCGACGCCACG
TCAGCAGCCTCCTTAATCTGCTCCCAACTCGAAGCCATCAACAATAAGTT
CTCCGACACCGCATACGCCGTCGACTCCACCTACCTCCTCTTCTCCGCCT
ACTTAGTCTTCTCCATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCC
GTCCGCGCCAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGC
CGCCGCCGGCGGCCTCTTCTACTACCTTTTCGGCTTCGCCTTCGCCTTCG
GCACCCCATCCAACGGCTTCATCGGCCGCCACAACTTCGCCCTCAAGTCC
TTCCCCACCTCCAACTTCGACTACAGCTACTTCCTCTACCAATGGGCCTT
CGCCATCGCCGCCGCCGGCATCACCTCCGGCTCCATCGCCGAGCGCACCC
AGTTCGTCGCCTACTTAATCTACTCCTCCTTCCTCACGGGCTTCGTCTAC
CCCGTCGTCTCCCATTGGTTCTGGTCCGTCGACGGCTGGGCCAGCGCCTC
TAACACCGGCGACCTCTT
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