FC932368

Overview
NameFC932368
Unique NameFC932368
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length415
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3817 contig Ccv1_Contig3817:1..415. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: NIFU_ECOL6 (NifU-like protein OS=Escherichia coli O6 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: NIFU_ECO57 (NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 53/77 (68.83%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DA FKT+GCGSAIASSS+ TEWVKGK + E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   49 DEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU1_YARLI (Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia lipolytica GN=ISU1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 60/96 (62.50%), Postives = 69/96 (71.88%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR--TKPSAASEAELPPRAA 285
            ++ G I D  FKTFGCGSAIASSS  TE V+GK + E   IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +KR    P+  +EA   P AA
Sbjct:   82 DDNGVIQDVKFKTFGCGSAIASSSYVTELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKRKTKNPTLGAEAAETPAAA 177          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU1_ASHGO (Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya gossypii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.079e-25
Identity = 56/79 (70.89%), Postives = 64/79 (81.01%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            D+ TG I +  FKTFGCGSAIASSS  TE V+GK + +   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY +KR
Sbjct:   70 DDSTGVIENVKFKTFGCGSAIASSSYMTELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYRSKR 148          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU1_CANGA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida glabrata GN=ISU1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.957e-25
Identity = 56/80 (70.00%), Postives = 64/80 (80.00%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 240
            +++TG I D  FKTFGCGSAIASSS  TE V G  + +   IKNT IAK LSLPPVKLHCSMLAEDAIKAA+KDY++KRT
Sbjct:  128 NDKTGVIEDVKFKTFGCGSAIASSSYMTELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRT 207          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.087e-25
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            + G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNK 124          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.087e-25
Identity = 55/79 (69.62%), Postives = 65/79 (82.28%), Query Frame = 1
Query:    1 DEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++++G I +  FKTFGCGSAIASSS  TE V+G  + E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ KR
Sbjct:   72 NDKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: NIFU_HAEIN (NifU-like protein OS=Haemophilus influenzae GN=nifU PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 1.187e-24
Identity = 52/78 (66.67%), Postives = 67/78 (85.90%), Query Frame = 1
Query:    4 EETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++ G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK+
Sbjct:   48 DDNGIIEDAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQ 125          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU1_TRAHO (Iron sulfur cluster assembly protein 1 OS=Trachipleistophora hominis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.550e-24
Identity = 54/76 (71.05%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    7 ETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            E   I DA F+TFGCGSAIASSS+ATEW+KGK + + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct:   60 ENDIIKDAKFRTFGCGSAIASSSLATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKK 135          
BLAST of FC932368 vs. ExPASy Swiss-Prot
Match: ISU1_ENCCU (Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi GN=ISU1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.238e-23
Identity = 54/77 (70.13%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPS 249
            I DA FKTFGCGSAIASSS+ATEW+K K + E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+   + KPS
Sbjct:   64 IEDAKFKTFGCGSAIASSSLATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF-LDKNKPS 139          
The following BLAST results are available for this feature:
BLAST of FC932368 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
NIFU_ECOL64.079e-2568.83NifU-like protein OS=Escherichia coli O6 GN=nifU P... [more]
NIFU_ECO574.079e-2568.83NifU-like protein OS=Escherichia coli O157:H7 GN=n... [more]
ISU1_YARLI4.079e-2562.50Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_ASHGO4.079e-2570.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
ISU1_CANGA6.957e-2570.00Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCBP9.087e-2568.42NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
ISU2_YEAST9.087e-2569.62Iron sulfur cluster assembly protein 2, mitochondr... [more]
NIFU_HAEIN1.187e-2466.67NifU-like protein OS=Haemophilus influenzae GN=nif... [more]
ISU1_TRAHO1.550e-2471.05Iron sulfur cluster assembly protein 1 OS=Trachipl... [more]
ISU1_ENCCU2.238e-2370.13Iron sulfur cluster assembly protein 1 OS=Encephal... [more]

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Properties
Property NameValue
Genbank descriptionC34207H04EF PostHarveN Citrus clementina cDNA clone C34207H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932368 ID=FC932368; Name=FC932368; organism=Citrus clementina; type=EST; length=415bp
GATGAAGAGACTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTTGGCTG
TGGCTCGGCCATCGCTTCATCTTCTGTTGCAACGGAATGGGTGAAAGGGA
AGCAGATGCAGGAAGTCTTGTCCATTAAAAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCTGTTAAACTGCATTGCAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAACCAAGTG
CTGCTTCAGAGGCAGAACTACCTCCAAGGGCTGCTGATGTTTGAAGATAT
TGATGTAAACATTTGAAAATGATGTTAATGTTCTGCCTGTGGAGATGTAT
CAGGATAACTGCACCTCCTAAAGATTGATGTCGGGTGGTGGAGGGGGTAA
AGTTTTGGGTTATTG
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