FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932372_ssr9 microsatellite FC932372_ssr9:9..42. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932372_ssr65 microsatellite FC932372_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.314e-41
Identity = 87/152 (57.24%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAG+ER RTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LV NK+D+  +K+ V  +  +  AD  GI F ETSAK   NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 4.992e-41
Identity = 85/152 (55.92%), Postives = 108/152 (71.05%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRT EL+GK +KLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++A + VN++LV NK+DM + K+ V  S  +  AD   I F ETSAK + NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVD-KKVVEYSVAKEFADSLNIPFLETSAKDSTNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.992e-41
Identity = 83/152 (54.61%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  233 KLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            K+LLIGDSGVGKSCLLLR                  KI+T+ LDGK IKLQIWDTAG+ERFRTIT++YYRGA GI+LVYD TD+ SF N++ W+  I+++A +NVNK+LV NK D+  +++ V +++ ++ A+ YGI F ETSAK   NV E
Sbjct:   12 KILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDL-VNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEE 162          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1A_DICDI (Ras-related protein Rab-1A OS=Dictyostelium discoideum GN=rab1A PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 6.520e-41
Identity = 87/152 (57.24%), Postives = 109/152 (71.71%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNV 682
            L KLLLIGDSGVGKSCLLLR                  KIRTIEL+GK IKLQIWDTAG+ERFRTIT++YYRGA GI++VYDVTD+ +F N+R W++ I++ A +NVNK+LV NK+D+  +K+ V  +  +A AD   I F ETSAK + NV
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYSESFISTIGVDFKIRTIELNGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDKLTFENVRQWLQEIDRFACENVNKLLVGNKSDL-VAKKVVDFNTAKAFADSLQIPFLETSAKQSTNV 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38
Identity = 79/162 (48.77%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAG+ER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+ NKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN+ E    L ++
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTEL 168          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.359e-38
Identity = 79/162 (48.77%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAG+ER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+ NKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN+ E    L ++
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTEL 168          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.775e-38
Identity = 79/162 (48.77%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAG+ER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+ NKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN+ E    L ++
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTEL 168          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38
Identity = 85/169 (50.30%), Postives = 113/169 (66.86%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHL-PDISKTADQ 730
            L+K+L+IGDSGVGKSC+LLR                   IRTIELDGK+IKLQIWDTAG+ERF+TITT+YYRGA G+++VYD+T   SFN+I+ W+ ++++ AS +V K++V NK D++ SKRAV     +  ADE  I   ETSAK +  + E    L  DI K+  Q
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKKSTPQ 200          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.028e-38
Identity = 78/162 (48.15%), Postives = 110/162 (67.90%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            L +LLLIGDSGVGK+CLL R                  K++TI++DG ++++QIWDTAG+ER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+ NKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN+ E    L ++
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTEL 168          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.811e-38
Identity = 79/162 (48.77%), Postives = 108/162 (66.67%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YDVT+E SFN++++W+  I+ ++ DN   ILV NK DM E +R +   +G+ LAD+ G++FFETSAK N+NV      L DI
Sbjct:   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDM-EDQRVISFERGRQLADQLGVEFFETSAKENVNVKAVFERLVDI 181          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB1B_PIG1.314e-4157.24Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
YPT1_SCHPO4.992e-4155.92GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1D_DICDI4.992e-4154.61Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAB1A_DICDI6.520e-4157.24Ras-related protein Rab-1A OS=Dictyostelium discoi... [more]
RAB15_RAT1.359e-3848.77Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN1.359e-3848.77Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN1.775e-3848.77Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB1C_DICDI3.028e-3850.30Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB15_MOUSE3.028e-3848.15Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]
RAB3_DROME8.811e-3848.77Ras-related protein Rab-3 OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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