FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932372_ssr9 microsatellite FC932372_ssr9:9..42. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932372_ssr65 microsatellite FC932372_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3B_RAT (Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.459e-37
Identity = 77/161 (47.83%), Postives = 106/161 (65.84%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPD 709
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILV NK DM+E +R +PT KG+ LA++ G  FFE SAK N++V +    L D
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVIPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVD 181
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 2.170e-36
Identity = 77/162 (47.53%), Postives = 106/162 (65.43%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAG+ER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LV NK DM E +R V + +G+ LAD  G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.835e-36
Identity = 78/162 (48.15%), Postives = 103/162 (63.58%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAG+ER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILV NK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV +    L DI
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDI 182
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAG+ERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILV NK D D  ++ V T      A + GI+ FETSAK N+NV E
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 159
[Close]
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 2 
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAG+ERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILV NK D D  ++ V T      A + GI+ FETSAK N+NV E
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 159
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3B_RAT7.459e-3747.83Ras-related protein Rab-3B OS=Rattus norvegicus GN... [more]
RAB3A_RAT2.170e-3647.53Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG2.170e-3647.53Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]
RAB3A_MOUSE2.170e-3647.53Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA2.170e-3647.53Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN2.170e-3647.53Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN2.170e-3647.53Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB3D_MOUSE4.835e-3648.15Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB35_RAT6.315e-3651.30Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE6.315e-3651.30Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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