FC932372

Overview
NameFC932372
Unique NameFC932372
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC932372_ssr9 microsatellite FC932372_ssr9:9..42. BLAST: Citrus ESTs to Prunus persica proteins V1
FC932372_ssr65 microsatellite FC932372_ssr65:65..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig15497 contig Ccv1_Contig15497:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 6.315e-36
Identity = 79/154 (51.30%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L KLL+IGDSGVGKS LLLR                  KIRT+E++G+++KLQIWDTAG+ERFRTIT+ YYRG  G+++VYDVT   SF N++ W+  I Q+  D+V +ILV NK D D  ++ V T      A + GI+ FETSAK N+NV E
Sbjct:    8 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKND-DPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEE 159          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.077e-35
Identity = 77/162 (47.53%), Postives = 103/162 (63.58%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGEFSFHLPDI 712
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAG+ER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILV NK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV +    L D+
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDV 182          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2B_MOUSE (Ras-related protein Rab-2B OS=Mus musculus GN=Rab2b PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 75/154 (48.70%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.400e-35
Identity = 75/154 (48.70%), Postives = 103/154 (66.88%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R + +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QH+S N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL-ESRRDVKREEGEAFAREHGLIFMETSAKTACNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
BLAST of FC932372 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.982e-35
Identity = 75/154 (48.70%), Postives = 102/154 (66.23%), Query Frame = 2
Query:  227 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGRERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVENKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVGE 688
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAG+E FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+ NK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NV E
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEE 158          
The following BLAST results are available for this feature:
BLAST of FC932372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB35_HUMAN6.315e-3651.30Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]
RAB3D_HUMAN1.077e-3547.53Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB2B_MOUSE2.400e-3548.70Ras-related protein Rab-2B OS=Mus musculus GN=Rab2... [more]
RAB2B_HUMAN2.400e-3548.70Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
RAB2A_RAT6.982e-3548.70Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2A_RABIT6.982e-3548.70Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB2A_PONAB6.982e-3548.70Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE6.982e-3548.70Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA6.982e-3548.70Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN6.982e-3548.70Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]

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Properties
Property NameValue
Genbank descriptionC34207H08EF PostHarveN Citrus clementina cDNA clone C34207H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932372 ID=FC932372; Name=FC932372; organism=Citrus clementina; type=EST; length=737bp
GGGGCGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAGACC
AAGTCCCCCCCCCCCACGCACGCACGGACTCTCTGTTCACAAGCAATCTC
TCCCATGTTACCGGCGACTTGTTAAATCTTCTCACCCTTACAGTTTCAGA
AAGAGAGTAATTGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAG
CGAGGGCACGTGCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGT
GACAGCGGTGTGGGGAAGAGTTGTTTGCTTCTGCGATCTTCAGACGTTTC
CTTCACAACCAGTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAA
CCATCGAGCTTGATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCT
GGTCGGGAACGGTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCAT
GGGGATTTTGCTGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATA
TTAGGAACTGGATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAAC
AAGATACTTGTTGAGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGT
ACCTACTTCAAAGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCT
TTGAAACTAGTGCAAAAACTAATTTGAATGTGGGAGAGTTTTCTTTTCAT
TTGCCAGATATCAGCAAGACTGCAGATCAGATCTAAT
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