FC932374

Overview
NameFC932374
Unique NameFC932374
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length727
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_DICDI (WD repeat-containing protein 5 homolog OS=Dictyostelium discoideum GN=wdr5 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.123e-13
Identity = 58/219 (26.48%), Postives = 101/219 (46.12%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV-YSPVDPRVLFSASDDT 692
            LK     H +S+ +V + P  +     L + S D+T+K+W   D + ERT  GH  G+  +A      +  SAS D  ++++DV++   + TL+     V+ + F+P+ + L V+G    +V++WD         +             S+    V  V ++ DG  +  GS DGT+ ++D T  + L+ +        S V +SP    VL    D+T
Sbjct:   38 LKYTLKGHLKSISSVKFSPDGKW----LASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASDDKTIKIWDVESGKMVKTLKGHKEYVFGVSFNPQ-SNLIVSGSFDENVRIWDVNTGECTKMI-------------SAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPNGKFVLAGTLDNT 238          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDS_DROME (Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 62/219 (28.31%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V AV + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  S S D  ++V+++ T  S+ TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   64 LKFTLAGHTKAVSAVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSRLLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVRTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 264          

HSP 2 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 59/225 (26.22%), Postives = 106/225 (47.11%), Query Frame = 3
Query:   54 NAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLV--YSPVDPRVLFSASDDTHVHMYDAXGK 722
            + H+  +  V W  ++++R  LL++GS D+T+K+W     +  +T  GH   V     +P   +  S S D  VR++DV T   + TL A    V  + F+  G+ L V+       ++WDTA+   + TL           D +    FV    +SP+G+ I   ++D T+ ++D ++ K L    GH      +   +S    + + S S+D  V++++   K
Sbjct:  111 SGHKLGISDVAW--SSDSR--LLVSGSDDKTLKVWELSTGKSLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVRTGKCLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQCLKTLI---------DDDNPPVSFV---KFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQSK 318          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_LEIIN (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   48 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 596
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_LEICH (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania chagasi PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   48 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 596
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIAFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: Y143_SYNY3 (Uncharacterized WD repeat-containing protein slr0143 OS=Synechocystis sp. (strain PCC 6803) GN=slr0143 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 66/222 (29.73%), Postives = 101/222 (45.50%), Query Frame = 3
Query:   60 HEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDAXGKV 725
            H  S++ V + P  +    +  T   D+TVK+W  D   L+ T  GH   V SV+  P G I AS S D  VR++   +  ++A L      V   QF P G TL V+      ++LWD    NLI    +P             +     V W P+G  +A  + DGT+ ++   + +    L GH   V  +V++P D + LFS+S +  V  +   GK+
Sbjct:  600 HTGSIYRVDFSPNGK----IFATAGQDQTVKIWDLDGNLLQ-TLKGHQDSVYSVSFSPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSPDGQTL-VSVCRDGQIRLWDLDG-NLIRQFGLP-------------EVAFFGVNWHPNGNLLAVAADDGTVRLW-TPQGEIKATLSGHDEFVTRVVFTP-DGKQLFSSSSNGSVIHWSTSGKM 799          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_HUMAN (WD repeat-containing protein 69 OS=Homo sapiens GN=WDR69 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 56/199 (28.14%), Postives = 89/199 (44.72%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713
            L+ TGS+D T KLW   + +   T  GH   ++S++ + SG    + S D  V V+D DT   +  L    +E+    F+    +L + G    + KLWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     K +  LEGH   +  + ++P    +L  +SD T   ++DA
Sbjct:  191 LVATGSMDTTAKLWDIQNGEEVYTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGRKVNILIGHCAEISSASFN-WDCSLILTGSMDKTCKLWDATNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHLLTGSSDKT-ARIWDA 374          

HSP 2 Score: 67.3958 bits (163), Expect = 8.902e-11
Identity = 46/155 (29.68%), Postives = 75/155 (48.39%), Query Frame = 3
Query:  114 ALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVF 578
            +L+LTGS+D+T KLW   + +   T TGH   ++      +G + A+AS D   R+F   T   IA LE    E+ ++ F+P+G  L + G    + ++WD      +  L     EG   TD+      + S A++  G  +  GS D T  ++
Sbjct:  274 SLILTGSMDKTCKLWDATNGKCVATLTGHDDEILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNHL-LTGSSDKTARIWDAQTGQCLQVL-----EG--HTDE------IFSCAFNYKGNIVITGSKDNTCRIW 414          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: GBLP_LEIMA (Guanine nucleotide-binding protein subunit beta-like protein OS=Leishmania major PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.503e-13
Identity = 53/183 (28.96%), Postives = 92/183 (50.27%), Query Frame = 3
Query:   48 VENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAK 596
            + + HE+ V ++ + P+ E    ++++GS D T+K+W  +  + ERT  GH   V +V   P G + AS   D    ++D+ T   +  +    S + Q+ F P    + VA   S SV  +D  +  +IA L+   P+G KP++        +S+AWS DG  +  G  D  I V+ ++ A+
Sbjct:  145 LRDGHEDWVSSICFSPSLEH--PIVVSGSWDNTIKVWNVNGGKCERTLKGHSNYVSTVTVSPDGSLCASGGKDGAALLWDLSTGEQLFKINV-ESPINQIGFSPNRFWMCVATERSLSV--YDLESKAVIAELT---PDGAKPSE-------CISIAWSADGNTLYSGHKDNLIRVWSISDAE 312          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR69_MACFA (WD repeat-containing protein 69 OS=Macaca fascicularis GN=WDR69 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 56/199 (28.14%), Postives = 89/199 (44.72%), Query Frame = 3
Query:  117 LLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHLEGHFMPVRSLVYSPVDPRVLFSASDDTHVHMYDA 713
            L+ TGS+D T KLW   + +   T  GH   ++S++ + SG    + S D  V V+D DT   +  L    +E+    F+    +L + G    +  LWD      +ATL+    E             +L   +   G+ IA  S DGT  +F     K +  LEGH   +  + ++P   R+L  +SD T   ++DA
Sbjct:  191 LVATGSMDTTAKLWNIQNGEEVCTLRGHSAEIISLSFNTSGDRIITGSFDHTVVVWDADTGGKVNILIGHCAEISSALFN-WDCSLILTGSMDKTCMLWDATNGKCVATLTGHDDE-------------ILDSCFDYTGKLIATASADGTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKT-ARIWDA 374          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_XENTR (WD repeat-containing protein 5 OS=Xenopus tropicalis GN=wdr5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
BLAST of FC932374 vs. ExPASy Swiss-Prot
Match: WDR5_RAT (WD repeat-containing protein 5 OS=Rattus norvegicus GN=Wdr5 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.269e-13
Identity = 61/219 (27.85%), Postives = 102/219 (46.58%), Query Frame = 3
Query:   39 LKSVENAHEESVWAVTWVPATETRPALLLTGSLDETVKLWRPDDMQLERTNTGHCLGVVSVAAHPSGIIAASASLDSFVRVFDVDTNASIATLEAPPSEVWQMQFDPKGTTLAVAGGGSASVKLWDTAAWNLIATLSIPRPEGLKPTDKSSSKKFVLSVAWSPDGRRIACGSMDGTISVFDVTRAKFLHHL-EGHFMPVRSLVYSPVDPRVLFSASDDT 692
            LK     H ++V +V + P  E     L + S D+ +K+W   D + E+T +GH LG+  VA      +  SAS D  ++++DV +   + TL+   + V+   F+P+ + L V+G    SV++WD      + TL    P    P         V +V ++ DG  I   S DG   ++D    + L  L +    PV  + +SP    +L +  D+T
Sbjct:   37 LKFTLAGHTKAVSSVKFSPNGEW----LASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTL----PAHSDP---------VSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237          
The following BLAST results are available for this feature:
BLAST of FC932374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
WDR5_DICDI1.123e-1326.48WD repeat-containing protein 5 homolog OS=Dictyost... [more]
WDS_DROME1.916e-1328.31Protein will die slowly OS=Drosophila melanogaster... [more]
GBLP_LEIIN1.916e-1328.96Guanine nucleotide-binding protein subunit beta-li... [more]
GBLP_LEICH1.916e-1328.96Guanine nucleotide-binding protein subunit beta-li... [more]
Y143_SYNY32.503e-1329.73Uncharacterized WD repeat-containing protein slr01... [more]
WDR69_HUMAN2.503e-1328.14WD repeat-containing protein 69 OS=Homo sapiens GN... [more]
GBLP_LEIMA2.503e-1328.96Guanine nucleotide-binding protein subunit beta-li... [more]
WDR69_MACFA3.269e-1328.14WD repeat-containing protein 69 OS=Macaca fascicul... [more]
WDR5_XENTR3.269e-1327.85WD repeat-containing protein 5 OS=Xenopus tropical... [more]
WDR5_RAT3.269e-1327.85WD repeat-containing protein 5 OS=Rattus norvegicu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34207H10EF PostHarveN Citrus clementina cDNA clone C34207H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932374 ID=FC932374; Name=FC932374; organism=Citrus clementina; type=EST; length=727bp
GAGGGTTGTGTCCACCAAACCAAATGAAATTTGCTGGTCTAAAATCAGTC
GAGAACGCGCACGAGGAGTCAGTATGGGCGGTCACGTGGGTACCGGCGAC
CGAGACTCGACCGGCGCTCTTGCTGACGGGATCGTTGGACGAGACCGTGA
AGCTGTGGCGGCCCGACGACATGCAGCTGGAGCGGACCAACACTGGCCAC
TGTTTGGGCGTAGTCTCTGTGGCAGCGCACCCGTCTGGTATTATAGCTGC
CTCTGCTTCTCTCGACAGCTTTGTTCGAGTATTTGATGTCGACACCAACG
CCTCTATTGCTACTCTCGAAGCTCCTCCTTCTGAAGTCTGGCAAATGCAG
TTCGATCCTAAGGGTACCACTCTAGCTGTTGCTGGAGGGGGTAGTGCATC
TGTAAAGCTCTGGGACACAGCCGCTTGGAATCTGATTGCCACCCTGTCAA
TTCCTCGTCCAGAAGGACTGAAGCCGACAGATAAAAGTAGCAGCAAGAAG
TTTGTTCTATCAGTTGCATGGAGTCCTGATGGCAGACGAATTGCTTGTGG
TTCAATGGATGGCACAATTTCTGTTTTTGATGTTACCCGTGCCAAATTCC
TGCATCATCTGGAAGGCCATTTCATGCCTGTGCGTTCTCTTGTTTATTCC
CCTGTTGATCCACGTGTTCTCTTCTCTGCATCAGATGATACTCATGTGCA
CATGTATGATGCTNGAGGTAAAGTCTG
back to top