FC932380

Overview
NameFC932380
Unique NameFC932380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length753
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC932380 vs. ExPASy Swiss-Prot
Match: FUT3_ARATH (Fucosyltransferase 3 OS=Arabidopsis thaliana GN=FUT3 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.705e-29
Identity = 67/165 (40.61%), Postives = 91/165 (55.15%), Query Frame = 1 
Query:  169 IAVLSIALPVLFILVLICRDRGLNPFIGAEDDLSKLIREDEPTSEDEINGENQLSSDKL-LGGL-LAPNFTKRDCLSRYQSISYRKSSPYVPSLYLVSKLREYEKLHNRCGPDTESYKNSIKDMVSGQNDSS--SECRYVVWIARAG-LGNRILSIASAFLMLFL 648
            +AVL +A  V+F L ++ RD   +  I  E     L        +  ++ +  LS  K  LG + L P+F K  CLSRY++  YRK SP+  S YL  +L+ YE LH RCGP T SY  ++  + SG       S CRYV+W+   G LGNR+LS+ASAFL   L
Sbjct:   44 LAVLMVA-SVMFSLSVVLRDPPSDDVIETEAASRVL--------QSRLHQDGGLSEKKAQLGNINLVPSFDKESCLSRYEASLYRKESPFKQSSYLDYRLQRYEDLHRRCGPFTRSYNLTLDKLKSGDRSDGEVSGCRYVIWLNSNGDLGNRMLSLASAFLYALL 199

HSP 2 Score: 47.7506 bits (112), Expect = 6.705e-29
Identity = 19/32 (59.38%), Postives = 24/32 (75.00%), Query Frame = 2 
Query:  650 NRVLLIDEEPEMANLFCEPFPKCTWLLPKDFP 745
            NR LL++   +MA+LFCEPFP  TW LP +FP
Sbjct:  201 NRFLLVELGVDMADLFCEPFPNTTWFLPPEFP 232
The following BLAST results are available for this feature:
BLAST of FC932380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
FUT3_ARATH6.705e-2940.61Fucosyltransferase 3 OS=Arabidopsis thaliana GN=FU... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC34208A04EF PostHarveN Citrus clementina cDNA clone C34208A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932380 ID=FC932380; Name=FC932380; organism=Citrus clementina; type=EST; length=753bp
GTTGCAGTTGCCAGCGTGCCAAAACACTTTTGCTCCACATAAAATATTAT
GCCTACTTCCATTTTGCTCCACACAAATCAAACCATCCGTTTTCAATTTA
TCTCCTTATAATCTTTCTTATTATTCCATCTTCATCGGGTGCGTTGGAGC
ATGACACGGTTTCCAAAAATTGCTGTCCTGTCAATAGCTTTGCCTGTCTT
ATTCATACTTGTTTTGATTTGCAGAGATAGAGGGTTGAATCCGTTCATTG
GTGCTGAAGACGACTTATCTAAGCTTATCAGAGAGGATGAACCCACCAGT
GAGGATGAAATCAATGGTGAGAATCAACTCAGCAGTGACAAACTTCTTGG
TGGGCTTCTTGCACCAAACTTCACGAAAAGAGATTGCTTAAGCAGGTACC
AATCCATCTCATATCGAAAATCTTCGCCATATGTGCCTTCTTTGTACCTT
GTTTCCAAGCTACGAGAATATGAAAAGCTTCATAATAGATGCGGACCTGA
CACAGAGTCATACAAGAACAGCATAAAAGACATGGTATCTGGTCAAAATG
ACAGTTCCTCCGAGTGTAGATACGTTGTTTGGATAGCCAGAGCCGGCCTG
GGAAACAGAATATTGAGCATAGCATCAGCTTTTCTTATGCTCTTCTTACA
ACCGAGTTCTGCTCATTGATGAAGAACCTGAAATGGCCAATCTGTTCTGT
GAGCCATTTCCAAAATGCACATGGTTGTTGCCAAAGGACTTTCCCTTCAT
GTA
back to top