FC932385

Overview
NameFC932385
Unique NameFC932385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10980 contig Ccv1_Contig10980:758..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP181_ARATH (Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.079e-43
Identity = 91/232 (39.22%), Postives = 136/232 (58.62%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +++I+ Y +N    EA  L+R M  ++  + PN  TM SV          E GK +HG  ++ G    +P+ SAL TMY++CG LE G  VF     +DVVSWN++IS    +G G +A+++F+EM+  G+ P  ++FV+++ ACSH G VE G   F  M  +  + P V+HYACMVDLL RA +L+EA + IE   I+ G  +W  LL +C+ H   EL   A +  ++L
Sbjct:  392 TSLISGYVQNSDNEEALILYRRM--KTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMAL 621          

HSP 2 Score: 93.9745 bits (232), Expect = 9.021e-19
Identity = 60/210 (28.57%), Postives = 102/210 (48.57%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            S M++ YA  G   EA ++F   + E  +   +     +V            G+ IH   ++ GL   + + +ALVTMY++C  L     +FD    R+ ++W+++++ Y  +G   +A+++F  M   G+ PS  + V VL ACS    +EEGK L   + K    R      A +VD+  +A  L +A K  + L+ E    +W SL+
Sbjct:  188 STMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTA-LVDMYAKAGCLADARKGFDCLQ-ERDVALWTSLI 395          

HSP 3 Score: 91.6633 bits (226), Expect = 4.477e-18
Identity = 55/157 (35.03%), Postives = 84/157 (53.50%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 479
            SAM+  Y++NG + EA +LF  M   S  + P+  T+V V          E+GK +H  +L+ G +  L   +ALV MYA+ G L   +  FD + +RDV  W SLIS Y  +    +A+ +++ M   G+ P+  +  SVL ACS    +E GK +
Sbjct:  291 SAMVTGYSQNGESLEAVKLFSRMF--SAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQV 445          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP168_ARATH (Pentatricopeptide repeat-containing protein At2g22070 OS=Arabidopsis thaliana GN=PCMP-H41 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.252e-43
Identity = 91/233 (39.06%), Postives = 137/233 (58.80%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +AMI  Y ++G   EA  LFR M+       PNS T+ ++            GK IHG  ++ G    + V +AL+TMYA+ G +      FD +  +RD VSW S+I +   HG+  +A+++F+ M+  G+ P  I++V V  AC+HAGLV +G+  F+ M+    + P++ HYACMVDL GRA  L+EA + IE + IEP    WGSLL +CR+H N++L + A++  L L
Sbjct:  382 TAMIVGYEQHGSYGEAINLFRSMVGGGQR--PNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNIDLGKVAAERLLLL 612          

HSP 2 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 62/241 (25.73%), Postives = 102/241 (42.32%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSW-------------------------------NSLISSYGVHGYGGKAIQIFKEMIYHG-VSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYA----CMVDLLGRANKLEEAAKIIE-----DLRIE 608
            + MI  Y   G   +A  +  +M+ E  +  P   T+ +V          E GK +H  I++ GL   + V ++L+ MYA+CG   + + VFD M  RD+ SW                               NS+IS +   GY  +A+ IF +M+    +SP   +  SVL AC++   +  GK +       H+V    +        ++ +  R   +E A ++IE     DL+IE
Sbjct:  115 TTMIVGYKNIGQYHKAIRVMGDMVKEGIE--PTQFTLTNVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLASVLSACANLEKLCIGKQI-----HSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTKDLKIE 348          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.859e-43
Identity = 87/228 (38.16%), Postives = 145/228 (63.60%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPG-PKVWGSLLGSCRIHCNVELAERASK 689
            ++MI+ Y +NG   +   +FR+M+ ++  + PN+VT+ S+          + GK +HG  +R+ LD  + V SALV MY++ G ++  + +F    +R+ V++ ++I  YG HG G +AI +F  M   G+ P  I+FV+VL ACS++GL++EG  +FE MR+ + ++PS EHY C+ D+LGR  ++ EA + ++ L  E    ++WGSLLGSC++H  +ELAE  S+
Sbjct:  490 NSMISGYTQNGHTEKTFLVFRKMLEQN--IRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQNVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILGYGQHGMGERAISLFLSMQESGIKPDAITFVAVLSACSYSGLIDEGLKIFEEMREVYNIQPSSEHYCCITDMLGRVGRVNEAYEFVKGLGEEGNIAELWGSLLGSCKLHGELELAETVSE 715          

HSP 2 Score: 81.6481 bits (200), Expect = 4.633e-15
Identity = 58/234 (24.79%), Postives = 115/234 (49.15%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD--KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            + MI+ + +NG+  E   L  EM  +   +  + +T+ ++          E GK  H  ++R+G+     + S L+ MY++ G + + Q +F+     +RD  +WNS+IS Y  +G+  K   +F++M+   + P+ ++  S+L ACS  G V+ GK L     ++++ + +V   + +VD+  +A  ++ A  +    +          +LG    +    + ERA   FLS+
Sbjct:  388 NTMISAFVQNGLDDEGLMLVYEMQKQGFKI--DYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQ-FEGMNSYLIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMISGYTQNGHTEKTFLVFRKMLEQNIRPNAVTVASILPACSQIGSVDLGKQLHGFSIRQYLDQ-NVFVASALVDMYSKAGAIKYAEDMFSQTKERNSVTYTTMILG----YGQHGMGERAISLFLSM 613          

HSP 3 Score: 79.337 bits (194), Expect = 2.299e-14
Identity = 54/211 (25.59%), Postives = 100/211 (47.39%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLL 638
            + MI  Y +N    E+ ELF E I  S ++  + VT +            E G+  HG + +   +  + +V++L+ MY+RCG +     VF  M +RDVVSWN++IS++  +G   + + +  EM   G     I+  ++L A S+    E GK     + ++ +    +  Y  ++D+  ++  +  + K+ E     E     W S++
Sbjct:  286 NTMIGVYVQNDCLVESIELFLEAI-GSKEIVSDEVTYLLAASAVSALQQVELGRQFHGFVSKNFRELPIVIVNSLMVMYSRCGSVHKSFGVFLSMRERDVVSWNTMISAFVQNGLDDEGLMLVYEMQKQGFKIDYITVTALLSAASNLRNKEIGKQTHAFLIRQGIQFEGMNSY--LIDMYSKSGLIRISQKLFEGSGYAERDQATWNSMI 493          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.859e-43
Identity = 90/239 (37.66%), Postives = 138/239 (57.74%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGL-------DSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +A+IA Y +NG   EA  LF   +++   +CP   +  ++            G   H  +L+ G        D I  V ++L+ MY +CG +E G  VF  M +RD VSWN++I  +  +GYG +A+++F+EM+  G  P  I+ + VL AC HAG VEEG+  F SM ++  V P  +HY CMVDLLGRA  LEEA  +IE++ ++P   +WGSLL +C++H N+ L +  ++  L +
Sbjct:  355 NALIAGYTQNGENEEALSLF--CLLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIF-VGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAEKLLEV 590          

HSP 2 Score: 90.8929 bits (224), Expect = 7.637e-18
Identity = 56/199 (28.14%), Postives = 100/199 (50.25%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRI 605
            ++M++ +A++    EA   F  M  E   L  N  +  SV           +G  +H  I +    S + + SALV MY++CG +   Q VFD M  R+VVSWNSLI+ +  +G   +A+ +F+ M+   V P  ++  SV+ AC+    ++ G+ +   + K   +R  +      VD+  + ++++EA  I + + I
Sbjct:  121 NSMVSGFAQHDRCEEALCYFAMMHKEGFVL--NEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317          

HSP 3 Score: 72.0182 bits (175), Expect = 3.671e-12
Identity = 48/178 (26.97%), Postives = 90/178 (50.56%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMD-------------------------------KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 446
            +++I C+ +NG A EA ++F +M++ES  + P+ VT+ SV          + G+ +HG +++   L + + + +A V MYA+C +++  + +FD M                                +R+VVSWN+LI+ Y  +G   +A+ +F  +    V P+  SF ++L AC+
Sbjct:  222 NSLITCFEQNGPAVEALDVF-QMMLESR-VEPDEVTLASVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACA 397          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.170e-42
Identity = 80/209 (38.28%), Postives = 129/209 (61.72%), Query Frame = 3
Query:   81 MESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLS 707
            M   ++ P+  T +              GK IH C+LR G +S L + +AL+ MY++CG LE    VF+ M +RDVV+W  +I +YG++G G KA++ F +M   G+ P  + F++++ ACSH+GLV+EG   FE M+  + + P +EHYAC+VDLL R+ K+ +A + I+ + I+P   +W S+L +CR   ++E AER S+  + L+
Sbjct:  500 MRKSEVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERVSRRIIELN 708          

HSP 2 Score: 90.5077 bits (223), Expect = 9.974e-18
Identity = 55/157 (35.03%), Postives = 87/157 (55.41%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKML 479
            +++I  +++NG+  EA E + ++      + P+  T  SV          E G +++  IL  G +S L V +ALV MY+R G L   + VFD M  RD+VSWNSLIS Y  HGY  +A++I+ E+    + P   +  SVL A  +  +V++G+ L
Sbjct:   75 NSIIRAFSKNGLFPEALEFYGKL--RESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGL 229          

HSP 3 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 54/210 (25.71%), Postives = 104/210 (49.52%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            +++I+ Y+ +G   EA E++ E+  ++  + P+S T+ SV          +QG+ +HG  L+ G++S++ V + LV MY +  +    + VFD MD RD VS+N++I  Y       +++++F E +     P  ++  SVL AC H   +   K ++  M K   V  S      ++D+  +   +  A  +   +  +     W S++
Sbjct:  176 NSLISGYSSHGYYEEALEIYHEL--KNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL-DQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGFVLESTVR-NILIDVYAKCGDMITARDVFNSMECKDTVS-WNSII 380          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP405_ARATH (Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.528e-42
Identity = 96/238 (40.34%), Postives = 135/238 (56.72%), Query Frame = 3
Query:    3 PGSAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKR----DVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            P SA+IA   +N +  +A  LF+ M  E  D+ PN  T+ S+           Q   IH  + + G  S L   + LV +Y++CG LE    +F+ + ++    DVV W +LIS YG+HG G  A+Q+F EM+  GV+P+ I+F S L ACSH+GLVEEG  LF  M + +       HY C+VDLLGRA +L+EA  +I  +  EP   VWG+LL +C  H NV+L E A+     L
Sbjct:  387 PWSAIIAGCVQNELVSDALGLFKRMRRE--DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGALLAACVTHENVQLGEMAANKLFEL 622          

HSP 2 Score: 95.9005 bits (237), Expect = 2.374e-19
Identity = 56/214 (26.17%), Postives = 106/214 (49.53%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDL-RIEPGPKVWGSLLGSC 647
            + MI+ Y RNG   +A  +F  M+ ES DL  +  T+VS+          E G+ +H  +  + L   + V +ALV MY +CG+++  + VFD M++RDV++W  +I+ Y   G    A+++ + M + GV P+ ++  S++  C  A  V +GK L         V   +     ++ +  +  +++   ++     +   GP  W +++  C
Sbjct:  187 NTMISGYYRNGYMNDALMMFDWMVNESVDL--DHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCL-HGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGP--WSAIIAGC 395          

HSP 3 Score: 92.0485 bits (227), Expect = 3.428e-18
Identity = 56/193 (29.02%), Postives = 95/193 (49.22%), Query Frame = 3
Query:   15 MIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIE 593
            +I  Y R G+  +A  +F  M+ E     P+  T   V          + G ++HG ILR        V +AL+ MY   GK+E+ + VFD M  RDV+SWN++IS Y  +GY   A+ +F  M+   V     + VS+L  C H   +E G+ +   + +E  +   +E    +V++  +  +++EA  + +
Sbjct:   86 VIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNV-HKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFD 277          

HSP 4 Score: 67.781 bits (164), Expect = 6.923e-11
Identity = 53/219 (24.20%), Postives = 103/219 (47.03%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPK---VWGSLLGSCRIH 656
            + MI  Y  +G    A EL R  +M+   + PN+VT+ S+            GK +HG  +R+ + S + + ++L++MYA+C +++L   VF    K     W+++I+    +     A+ +FK M    V P+  +  S+L A +    + +   +   + K   +  S++    +V +  +   LE A KI   ++ +   K   +WG+L+    +H
Sbjct:  288 TCMINGYTEDGDVENALELCR--LMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFM-SSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMH 503          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.528e-42
Identity = 90/238 (37.82%), Postives = 138/238 (57.98%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLC--PNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK-EHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLSLQ 713
            + + +CY RN    +   LF +M     D C  P+ VT +            + GK +H  I   GL   L + + LV+MY+RCG ++    VF  M +R+VVSW +LIS   ++G+G +AI+ F EM+  G+SP   +   +L ACSH+GLV EG M F+ MR  E  ++P++ HY C+VDLLGRA  L++A  +I+ + ++P   +W +LLG+CR+H +VEL ER     + L  +
Sbjct:  183 NVLFSCYLRNKRTRDVLVLFDKM-KNDVDGCVKPDGVTCLLALQACANLGALDFGKQVHDFIDENGLSGALNLSNTLVSMYSRCGSMDKAYQVFYGMRERNVVSWTALISGLAMNGFGKEAIEAFNEMLKFGISPEEQTLTGLLSACSHSGLVAEGMMFFDRMRSGEFKIKPNLHHYGCVVDLLGRARLLDKAYSLIKSMEMKPDSTIWRTLLGACRVHGDVELGERVISHLIELKAE 419          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.996e-42
Identity = 86/218 (39.45%), Postives = 135/218 (61.93%), Query Frame = 3
Query:   51 EASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            E   LF+ M++   +  P+ +TM ++          + G  +H   L+ GL     + + L+ MYA+CG L   + +FD MD RDVVSW++LI  Y   G+G +A+ +FKEM   G+ P+ ++FV VL ACSH GLVEEG  L+ +M+ EH + P+ EH +C+VDLL RA +L EA + I+++++EP   VW +LL +C+   NV LA++A++  L +
Sbjct:  456 EMLRLFKLMLVSECE--PDHITMGNLLRGCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKI 671          

HSP 2 Score: 74.7146 bits (182), Expect = 5.663e-13
Identity = 57/245 (23.27%), Postives = 108/245 (44.08%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGV-SPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVE-----LAERASKGFLSLSLQCREL 725
            +++I  Y++NG   EA  L+ +M+ E  DL P+     S+            GK +H  +++    S L   +AL+ MY R  ++     VF  +  +D++SW+S+I+ +   G+  +A+   KEM+  GV  P+   F S L ACS     + G  +     K  +   ++     + D+  R   L  A ++ + +   P    W  ++     +   +      ++  S GF+  ++  R L
Sbjct:  137 TSVITGYSQNGQGAEAIRLYLKMLQE--DLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAG-CSLCDMYARCGFLNSARRVFDQIE-RPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSL 377          

HSP 3 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 55/216 (25.46%), Postives = 93/216 (43.06%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            S++IA +++ G  FEA    +EM+       PN     S           + G  IHG  ++  L        +L  MYARCG L   + VFD +++ D  SWN +I+    +GY  +A+ +F +M   G  P  IS  S+L A +    + +G  +   + K   +   +     ++ +    + L     + ED R       W ++L +C  H
Sbjct:  238 SSIIAGFSQLGFEFEALSHLKEMLSFGV-FHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFL-ADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNADSVSWNTILTACLQH 451          

HSP 4 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 42/162 (25.93%), Postives = 84/162 (51.85%), Query Frame = 3
Query:  114 TMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRK----EHMVRPSVEHYACMVDLLGRANKLEEAAKI 587
            T +S+           QG+ IH  IL         + + +++MY +CG L   + VFD M +R++VS+ S+I+ Y  +G G +AI+++ +M+   + P   +F S++ AC+ +  V  GK L   + K     H++  +      ++ +  R N++ +A+++
Sbjct:   69 TYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILNNHILSMYGKCGSLRDAREVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKLESSSHLIAQN-----ALIAMYVRFNQMSDASRV 225          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.996e-42
Identity = 94/233 (40.34%), Postives = 135/233 (57.94%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMD-KRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +A+IA Y R G    A +LFR+MI  +  + P   T  S             GK IHG ++R  +     V+S+L+ MY++ G LE  + VF   D K D V WN++IS+   HG G KA+++  +MI   V P+  + V +L ACSH+GLVEEG   FESM  +H + P  EHYAC++DLLGRA   +E  + IE++  EP   +W ++LG CRIH N EL ++A+   + L
Sbjct:  280 TALIAGYVRQGSGNRALDLFRKMI--ALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKL 510          

HSP 2 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 52/247 (21.05%), Postives = 102/247 (41.30%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDV-------------------------------VSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            + M+  YA++G   EA   ++E          N  +   +          +  +  HG +L  G  S + +  +++  YA+CG++E  +  FD M  +D+                               VSW +LI+ Y   G G +A+ +F++MI  GV P   +F S L A +    +  GK +   M + + VRP+    + ++D+  ++  LE + ++      +     W +++ +   H
Sbjct:  148 NTMVIGYAQDGNLHEALWFYKEFRRSGIKF--NEFSFAGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTN-VRPNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVFWNTMISALAQH 391          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.606e-42
Identity = 88/226 (38.94%), Postives = 139/226 (61.50%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERAS 686
            + MI+ Y+ NG   +A E+FREM  +  D+ PN VT+VSV          E G+ +H      G+     + SAL+ MY++CG +E    VF+ + + +V++W+++I+ + +HG  G AI  F +M   GV PS ++++++L ACSH GLVEEG+  F  M     + P +EHY CMVDLLGR+  L+EA + I ++ I+P   +W +LLG+CR+  NVE+ +R +
Sbjct:  243 NTMISGYSLNGFFKDAVEVFREM--KKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVA 466          

HSP 2 Score: 82.0333 bits (201), Expect = 3.547e-15
Identity = 68/249 (27.31%), Postives = 106/249 (42.57%), Query Frame = 3
Query:   45 AFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLE----------------------------------------LGQC-----VFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            A  A  LF EM M    + PN  T  SV          ++GK IHG  L+ G      V+S LV MY  CG ++                                        LG C     +FD M +R VVSWN++IS Y ++G+   A+++F+EM    + P+ ++ VSVL A S  G +E G+ L     ++  +R      + ++D+  +   +E+A  + E L  E     W +++    IH
Sbjct:  108 ALIAITLFYEM-MSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWL-HLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRE-NVITWSAMINGFAIH 353          
The following BLAST results are available for this feature:
BLAST of FC932385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
PP181_ARATH3.079e-4339.22Pentatricopeptide repeat-containing protein At2g33... [more]
PP168_ARATH5.252e-4339.06Pentatricopeptide repeat-containing protein At2g22... [more]
PP246_ARATH6.859e-4338.16Pentatricopeptide repeat-containing protein At3g22... [more]
PP151_ARATH6.859e-4337.66Pentatricopeptide repeat-containing protein At2g13... [more]
PP210_ARATH1.170e-4238.28Pentatricopeptide repeat-containing protein At3g03... [more]
PP405_ARATH1.528e-4240.34Pentatricopeptide repeat-containing protein At5g39... [more]
PP267_ARATH1.528e-4237.82Pentatricopeptide repeat-containing protein At3g47... [more]
PP280_ARATH1.996e-4239.45Pentatricopeptide repeat-containing protein At3g53... [more]
PP167_ARATH1.996e-4240.34Pentatricopeptide repeat-containing protein At2g21... [more]
PP425_ARATH2.606e-4238.94Pentatricopeptide repeat-containing protein At5g48... [more]

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Properties
Property NameValue
Genbank descriptionC34208A09EF PostHarveN Citrus clementina cDNA clone C34208A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932385 ID=FC932385; Name=FC932385; organism=Citrus clementina; type=EST; length=733bp
GGCCGGGGAGTGCTATGATTGCTTGTTATGCTAGAAATGGGATGGCTTTT
GAGGCGTCGGAGCTTTTTCGTGAAATGATAATGGAGTCTCACGATTTATG
TCCGAATTCAGTGACTATGGTTAGTGTGCTTCAAGCTTGCGCGGCTCTTG
CTGCTTTAGAACAAGGGAAGATGATACATGGGTGCATATTAAGGAGGGGT
CTTGATTCTATTTTGCCTGTTGTAAGTGCATTGGTGACAATGTATGCGAG
ATGTGGAAAGCTTGAATTAGGTCAATGTGTTTTTGATCATATGGATAAGA
GGGATGTCGTTTCTTGGAATTCTTTAATTTCAAGCTATGGGGTTCATGGA
TATGGAGGGAAAGCAATTCAAATTTTTAAAGAGATGATTTATCATGGAGT
TTCACCGAGTCCTATATCTTTTGTTAGTGTTTTGGGAGCTTGCAGTCATG
CAGGGCTTGTTGAGGAGGGGAAGATGTTATTTGAATCTATGCGTAAAGAG
CATATGGTACGTCCTAGCGTGGAGCATTATGCTTGTATGGTAGATCTTCT
TGGTCGTGCTAATAAGTTAGAAGAAGCAGCCAAGATTATAGAAGATTTGA
GAATTGAACCGGGACCTAAGGTTTGGGGTTCATTGCTTGGATCGTGTCGG
ATTCATTGTAATGTTGAGCTTGCTGAGAGAGCAAGCAAAGGCTTTTTGAG
CTTGAGCCTACAATGCAGGGAATTATGTACTTC
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