FC932385

Overview
NameFC932385
Unique NameFC932385
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10980 contig Ccv1_Contig10980:758..1490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.868e-40
Identity = 90/233 (38.63%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVV-SALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +++I+ YA+   + EAS L REM++      PNS+T+ S+          + GK  H  ILRR       ++ ++LV +YA+ GK+   + V D M KRD V++ SLI  YG  G GG A+ +FKEM   G+ P  ++ V+VL ACSH+ LV EG+ LF  M+ E+ +RP ++H++CMVDL GRA  L +A  II ++  +P    W +LL +C IH N ++ + A++  L +
Sbjct:  350 NSIISGYAQLNKSEEASHLLREMLVAGFQ--PNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKIVAAKQVSDLMSKRDEVTYTSLIDGYGNQGEGGVALALFKEMTRSGIKPDHVTVVAVLSACSHSKLVHEGERLFMKMQCEYGIRPCLQHFSCMVDLYGRAGFLAKAKDIIHNMPYKPSGATWATLLNACHIHGNTQIGKWAAEKLLEM 580          

HSP 2 Score: 83.1889 bits (204), Expect = 1.592e-15
Identity = 61/241 (25.31%), Postives = 111/241 (46.06%), Query Frame = 3
Query:    3 PGSAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSLSLQCREL 725
            P + +IA YA+N +  E    ++ M+  S  + P++ T  SV            G+++HG I      S L V +AL++MY R   + + + +FD M +RD VSWN++I+ Y   G   +A ++F +M + GV  S I++  + G C   G       L   MR       S++  A ++ L        +A  +I  +R+       G  +    IH + +  +      +++  +C++L
Sbjct:  111 PWNVLIASYAKNELFEEVIAAYKRMV--SKGIRPDAFTYPSVLKACGETLDVAFGRVVHGSIEVSSYKSSLYVCNALISMYKRFRNMGIARRLFDRMFERDAVSWNAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRN---FPTSLDPVAMIIGL--------KACSLIGAIRL-------GKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDL 331          

HSP 3 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 60/243 (24.69%), Postives = 99/243 (40.74%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLC------------------------------PNS---VTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            +A+I CYA  GM  EA ELF +M     ++                               P S   V M+              GK IHG  +    D I  V + L+TMY++C  L     VF   ++  + +WNS+IS Y       +A  + +EM+  G  P+ I+  S+L  C+    ++ GK     + +    +     +  +VD+  ++ K+  AAK + DL  +     + SL+
Sbjct:  214 NAVINCYASEGMWSEAFELFDKMWFSGVEVSVITWNIISGGCLQTGNYVGALGLISRMRNFPTSLDPVAMIIGLKACSLIGAIRLGKEIHGLAIHSSYDGIDNVRNTLITMYSKCKDLRHALIVFRQTEENSLCTWNSIISGYAQLNKSEEASHLLREMLVAGFQPNSITLASILPLCARIANLQHGKEFHCYILRRKCFKDYTMLWNSLVDVYAKSGKI-VAAKQVSDLMSKRDEVTYTSLI 455          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR80_ARATH (Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E63 PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 2.440e-40
Identity = 83/232 (35.78%), Postives = 139/232 (59.91%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +AMI+ +  NG   EA   F +M+ +  ++CPNS T  SV           +G  IHG +++  + + L V ++LV+MY +CG       +F  + + ++VS+N++IS Y  +G+G KA+++F  +   G  P+ ++F+++L AC H G V+ G   F+SM+  + + P  +HYACMVDLLGR+  L++A+ +I  +  +P   VWGSLL + + H  V+LAE A+K  + L
Sbjct:  407 TAMISAFVSNGYYEEALCWFHKMLQK--EVCPNSYTFSSVLSATASLADLIEGLQIHGRVVKMNIVNDLSVQNSLVSMYCKCGNTNDAYKIFSCISEPNIVSYNTMISGYSYNGFGKKALKLFSMLESSGKEPNGVTFLALLSACVHVGYVDLGWKYFKSMKSSYNIEPGPDHYACMVDLLGRSGLLDDASNLISTMPCKPHSGVWGSLLSASKTHLRVDLAELAAKKLIEL 636          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.186e-40
Identity = 82/232 (35.34%), Postives = 134/232 (57.76%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +A+IA Y ++    +   +F EM+    D+ PN  T+ SV           +G+ +H  +++  ++      + L+ +Y +CG LE    VF+ + +++V +W ++I+ +  HGY   A  +F  M+   VSP+ ++F++VL AC+H GLVEEG+ LF SM+    + P  +HYACMVDL GR   LEEA  +IE + +EP   VWG+L GSC +H + EL + A+   + L
Sbjct:  275 TALIAGYVQSRCFDKGMLVFEEMLKS--DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEAILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHGGLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGALFGSCLLHKDYELGKYAASRVIKL 504          

HSP 2 Score: 96.2857 bits (238), Expect = 1.818e-19
Identity = 67/217 (30.88%), Postives = 106/217 (48.85%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRG-LDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +AMI  + RNG A EA   F EM  +   +  N +T+VSV            G+ +HG  L  G +   + + S+LV MY +C   +  Q VFD M  R+VV+W +LI+ Y       K + +F+EM+   V+P+  +  SVL AC+H G +  G+ +   M K + +  +      ++DL  +   LEEA  + E L  E     W +++     H
Sbjct:  173 TAMIDGFVRNGSASEAMVYFVEM--KKTGVAANEMTVVSVLKAAGKVEDVRFGRSVHGLYLETGRVKCDVFIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKSDVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIK-NSIEINTTAGTTLIDLYVKCGCLEEAILVFERLH-EKNVYTWTAMINGFAAH 385          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 79/200 (39.50%), Postives = 120/200 (60.00%), Query Frame = 3
Query:   84 ESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHM-DKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAER 680
            ES    PN  T  S+            G+ +HG I RRG +  + + +AL+ MYA+CG +   Q VF  + D+R++VSW S++  YG HGYG +A+++F +M+  G+ P  I F++VL AC HAGLVE+G   F  M  E+ + P  + Y C+VDLLGRA K+ EA +++E +  +P    WG++LG+C+ H +  L  R
Sbjct:  305 ESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGFNKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMMIGYGSHGYGAEAVELFDKMVSSGIRPDRIVFMAVLSACRHAGLVEKGLKYFNVMESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDESTWGAILGACKAHKHNGLISR 504          

HSP 2 Score: 80.4925 bits (197), Expect = 1.032e-14
Identity = 44/210 (20.95%), Postives = 103/210 (49.05%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            + +I  +   G      +++++M++E+ ++ P  +T+               GK IH  +++RG  S LPV+++++ +Y RCG L   +  F  M+ +D+++WN+LIS         +A+ +F+     G  P+  +F S++ AC++   +  G+ L   + +      +VE    ++D+  +   + ++ ++  ++        W S++
Sbjct:  182 TTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIA--VRASASIDSVTTGKQIHASVIKRGFQSNLPVMNSILDLYCRCGYLSEAKHYFHEMEDKDLITWNTLISEL-ERSDSSEALLMFQRFESQGFVPNCYTFTSLVAACANIAALNCGQQLHGRIFRRGF-NKNVELANALIDMYAKCGNIPDSQRVFGEIVDRRNLVSWTSMM 387          

HSP 3 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 49/198 (24.75%), Postives = 91/198 (45.96%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCG-KLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDL 599
            +AMI  YA +     A E F EM+ +     PN  T+ SV            G ++HG +++ G++  L V +A++ MYA C   +E    +F  +  ++ V+W +LI+ +   G G   ++++K+M+      +P      + A +    V  GK +  S+ K    + ++     ++DL  R   L EA     ++
Sbjct:   80 TAMITGYASSNYNARAWECFHEMVKQGTS--PNEFTLSSVLKSCRNMKVLAYGALVHGVVVKLGMEGSLYVDNAMMNMYATCSVTMEAACLIFRDIKVKNDVTWTTLITGFTHLGDGIGGLKMYKQMLLENAEVTPYCITIAVRASASIDSVTTGKQIHASVIKRGF-QSNLPVMNSILDLYCRCGYLSEAKHYFHEM 274          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PPR57_ARATH (Pentatricopeptide repeat-containing protein At1g25360 OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 84/219 (38.36%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 MIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVEL 671
            MI+  A NG   E  +LF  M  E  + C  + +                G+  H  +L+ G DS L   +AL+TMYA+CG +E  + VF  M   D VSWN+LI++ G HG+G +A+ +++EM+  G+ P  I+ ++VL ACSHAGLV++G+  F+SM   + + P  +HYA ++DLL R+ K  +A  +IE L  +P  ++W +LL  CR+H N+EL
Sbjct:  388 MISGLAENGFGEEGLKLFSCMKREGFEPCDYAFS--GAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMEL 604          

HSP 2 Score: 87.8113 bits (216), Expect = 6.465e-17
Identity = 54/164 (32.93%), Postives = 87/164 (53.05%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKE 500
            +AMI+ Y   G   EA E+ R M+    +L  +  T  SV          + GK +H  +LRR  D      ++LV++Y +CGK +  + +F+ M  +D+VSWN+L+S Y   G+ G+A  IFKEM    +    +S++ ++   +  G  EEG  LF  M++E
Sbjct:  255 NAMISGYVNRGFYQEALEMVRRMVSSGIEL--DEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNI----LSWMIMISGLAENGFGEEGLKLFSCMKRE 411          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP436_ARATH (Pentatricopeptide repeat-containing protein At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 91/224 (40.62%), Postives = 136/224 (60.71%), Query Frame = 3
Query:   33 RNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            +N  AF+A   F++M+  +H L PNS T++++          + GK IHG  +  GL+    V SAL+ MY +CG +     +F    K+  V++NS+I  Y  HG   KA+++F +M   G     ++F ++L ACSHAGL + G+ LF  M+ ++ + P +EHYACMVDLLGRA KL EA ++I+ +R+EP   VWG+LL +CR H N+ELA  A+K    L
Sbjct:  268 QNEKAFDA---FKQML--THGLYPNSATIITLLPACTTLAYMKHGKEIHGYSVVTGLEDHGFVRSALLDMYGKCGFISEAMILFRKTPKKTTVTFNSMIFCYANHGLADKAVELFDQMEATGEKLDHLTFTAILTACSHAGLTDLGQNLFLLMQNKYRIVPRLEHYACMVDLLGRAGKLVEAYEMIKAMRMEPDLFVWGALLAACRNHGNMELARIAAKHLAEL 486          

HSP 2 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 46/159 (28.93%), Postives = 84/159 (52.83%), Query Frame = 3
Query:   15 MIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESM 491
            MI   ARNG   E+ + FREM  +   L  ++  + S+          E GKMIH  +L+   +S   +VS+L+ MY++ G++   + VF  + ++D+V +N++IS Y  +    +A+ + K+M   G+ P  I++ +++   SH    E+   + E M
Sbjct:   88 MIGACARNGYYQESLDFFREMYKDGLKL--DAFIVPSLLKASRNLLDREFGKMIHCLVLKFSYESDAFIVSSLIDMYSKFGEVGNARKVFSDLGEQDLVVFNAMISGYANNSQADEALNLVKDMKLLGIKPDVITWNALISGFSHMRNEEKVSEILELM 244          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 86/233 (36.91%), Postives = 139/233 (59.66%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYH-GVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            ++MI   A++     A ++FR+M +    +C + V++ +             GK IHG +++  L S +   S L+ MYA+CG L+    VF  M ++++VSWNS+I++ G HG    ++ +F EM+   G+ P  I+F+ ++ +C H G V+EG   F SM +++ ++P  EHYAC+VDL GRA +L EA + ++ +   P   VWG+LLG+CR+H NVELAE AS   + L
Sbjct:  511 NSMITRCAQSDNPSAAIDIFRQMGVSG--ICYDCVSISAALSACANLPSESFGKAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDL 741          

HSP 2 Score: 114.005 bits (284), Expect = 8.424e-25
Identity = 61/216 (28.24%), Postives = 114/216 (52.78%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIH 656
            +AMI+ Y  NG+  ++ E+FR ++     + PN +T+VS+          + G+ +HG I+++G D+   +  A++ MYA+CG++ L   +F+ + KRD+VSWNS+I+          AI IF++M   G+    +S  + L AC++      GK +   M K H +   V   + ++D+  +   L+ A  + + ++ E     W S++ +C  H
Sbjct:  410 TAMISGYLHNGLYIDSLEMFRWLVKVK--ISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK-EKNIVSWNSIIAACGNH 621          

HSP 3 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACS 446
            + M+  YA+ G      + F  M M+   + PN+VT   V          + G  +HG ++  G+D    + ++L++MY++CG+ +    +F  M + D V+WN +IS Y   G   +++  F EMI  GV P  I+F S+L + S
Sbjct:  208 NVMLNGYAKCGALDSVIKGFSVMRMDQ--ISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVS 351          

HSP 4 Score: 68.1662 bits (165), Expect = 5.301e-11
Identity = 52/214 (24.30%), Postives = 104/214 (48.60%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYAC-MVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSC 647
            + MI+ Y ++G+  E+   F EMI  S  + P+++T  S+          E  K IH  I+R  +   + + SAL+  Y +C  + + Q +F   +  DVV + ++IS Y  +G    ++++F+ ++   +SP+ I+ VS+L        ++ G+ L   + K+        +  C ++D+  +  ++  A +I E L  +     W S++  C
Sbjct:  309 NCMISGYVQSGLMEESLTFFYEMI--SSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDNRC--NIGCAVIDMYAKCGRMNLAYEIFERLS-KRDIVSWNSMITRC 517          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP128_ARATH (Pentatricopeptide repeat-containing protein At1g77170 OS=Arabidopsis thaliana GN=PCMP-E21 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.161e-40
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:    9 SAMIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLD--SILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAE 677
            +A+I      G A EA E+F +M  +   L P+  TMVSV               +H C+L+   +  S + ++++L+ MY +CG+++L   +F+ M +R+VVSW+S+I  Y  +G   +A++ F++M   GV P+ I+FV VL AC H GLVEEGK  F  M+ E  + P + HY C+VDLL R  +L+EA K++E++ ++P   VWG L+G C    +VE+AE
Sbjct:  187 NAIIGGLNHAGRANEAVEMFVDM--KRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMRQRNVVSWSSMIVGYAANGNTLEALECFRQMREFGVRPNKITFVGVLSACVHGGLVEEGKTYFAMMKSEFELEPGLSHYGCIVDLLSRDGQLKEAKKVVEEMPMKPNVMVWGCLMGGCEKFGDVEMAE 409          

HSP 2 Score: 67.3958 bits (163), Expect = 9.042e-11
Identity = 44/205 (21.46%), Postives = 94/205 (45.85%), Query Frame = 3
Query:   27 YARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFES-MRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLL 638
            Y R+    +A +++  M+  +  + P+  ++  V            GK +H   +R G        S  +T+Y + G+ E  + VFD   +R + SWN++I      G   +A+++F +M   G+ P   + VSV  +C   G +     L +  ++ +   +  +     ++D+ G+  +++ A+ I E++R +     W S++
Sbjct:   92 YIRHESPLDAIQVYLGMVRST--VLPDRYSLPIVIKAAVQIHDFTLGKELHSVAVRLGFVGDEFCESGFITLYCKAGEFENARKVFDENPERKLGSWNAIIGGLNHAGRANEAVEMFVDMKRSGLEPDDFTMVSVTASCGGLGDLSLAFQLHKCVLQAKTEEKSDIMMLNSLIDMYGKCGRMDLASHIFEEMR-QRNVVSWSSMI 293          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP235_ARATH (Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.435e-40
Identity = 87/230 (37.83%), Postives = 136/230 (59.13%), Query Frame = 3
Query:   15 MIACYARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASKGFLSL 704
            MI  Y R G   E+ E+FREM  +S  + P+  TMVSV          E G+ I   I +  + + + V +AL+ MY +CG  E  Q VF  MD+RD  +W +++     +G G +AI++F +M    + P  I+++ VL AC+H+G+V++ +  F  MR +H + PS+ HY CMVD+LGRA  ++EA +I+  + + P   VWG+LLG+ R+H +  +AE A+K  L L
Sbjct:  339 MIDGYLRAGCFNESLEIFREM--QSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILEL 566          

HSP 2 Score: 73.9442 bits (180), Expect = 9.660e-13
Identity = 46/146 (31.51%), Postives = 78/146 (53.42%), Query Frame = 3
Query:  165 GKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLR 602
            GK +H  +++ GL S L V +ALV MY+ CG +++ + VFD   K DV SWN +IS Y       ++I++  EM  + VSP+ ++ + VL ACS     +  K + E +  E    PS+     +V+      +++ A +I   ++
Sbjct:  154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYV-SECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMK 298          
BLAST of FC932385 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 5.435e-40
Identity = 80/220 (36.36%), Postives = 132/220 (60.00%), Query Frame = 3
Query:   30 ARNGMAFEASELFREMIMESHDLCPNSVTMVSVXXXXXXXXXXEQGKMIHGCILRRGLDSILPVVSALVTMYARCGKLELGQCVFDHMDKRDVVSWNSLISSYGVHGYGGKAIQIFKEMIYHGVSPSPISFVSVLGACSHAGLVEEGKMLFESMRKEHMVRPSVEHYACMVDLLGRANKLEEAAKIIEDLRIEPGPKVWGSLLGSCRIHCNVELAERASK 689
            A+NG   EA + F  M+    ++  N V+  +V            GK +H  +++R       V + L+ MY++CG L   Q VF  M KR+ VSWNS+I+++  HG+G  A+++++EM    V P+ ++F+S+L ACSH GL+++G+ L   M++ H + P  EHY C++D+LGRA  L+EA   I+ L ++P  K+W +LLG+C  H + E+ E A++
Sbjct:  333 AQNGSEEEAIQFFIRMLQAGVEIDANVVS--AVLGVSFIDNSLGLGKQLHSLVIKRKFSGNTFVNNGLINMYSKCGDLTDSQTVFRRMPKRNYVSWNSMIAAFARHGHGLAALKLYEEMTTLEVKPTDVTFLSLLHACSHVGLIDKGRELLNEMKEVHGIEPRTEHYTCIIDMLGRAGLLKEAKSFIDSLPLKPDCKIWQALLGACSFHGDTEVGEYAAE 550          
The following BLAST results are available for this feature:
BLAST of FC932385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
PP116_ARATH1.868e-4038.63Pentatricopeptide repeat-containing protein At1g71... [more]
PPR80_ARATH2.440e-4035.78Pentatricopeptide repeat-containing protein At1g53... [more]
PPR75_ARATH3.186e-4035.34Pentatricopeptide repeat-containing protein At1g50... [more]
PPR83_ARATH4.161e-4039.50Putative pentatricopeptide repeat-containing prote... [more]
PPR57_ARATH4.161e-4038.36Pentatricopeptide repeat-containing protein At1g25... [more]
PP436_ARATH4.161e-4040.63Pentatricopeptide repeat-containing protein At5g59... [more]
PP333_ARATH4.161e-4036.91Pentatricopeptide repeat-containing protein At4g21... [more]
PP128_ARATH4.161e-4038.22Pentatricopeptide repeat-containing protein At1g77... [more]
PP235_ARATH5.435e-4037.83Putative pentatricopeptide repeat-containing prote... [more]
PP215_ARATH5.435e-4036.36Pentatricopeptide repeat-containing protein At3g05... [more]

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Properties
Property NameValue
Genbank descriptionC34208A09EF PostHarveN Citrus clementina cDNA clone C34208A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932385 ID=FC932385; Name=FC932385; organism=Citrus clementina; type=EST; length=733bp
GGCCGGGGAGTGCTATGATTGCTTGTTATGCTAGAAATGGGATGGCTTTT
GAGGCGTCGGAGCTTTTTCGTGAAATGATAATGGAGTCTCACGATTTATG
TCCGAATTCAGTGACTATGGTTAGTGTGCTTCAAGCTTGCGCGGCTCTTG
CTGCTTTAGAACAAGGGAAGATGATACATGGGTGCATATTAAGGAGGGGT
CTTGATTCTATTTTGCCTGTTGTAAGTGCATTGGTGACAATGTATGCGAG
ATGTGGAAAGCTTGAATTAGGTCAATGTGTTTTTGATCATATGGATAAGA
GGGATGTCGTTTCTTGGAATTCTTTAATTTCAAGCTATGGGGTTCATGGA
TATGGAGGGAAAGCAATTCAAATTTTTAAAGAGATGATTTATCATGGAGT
TTCACCGAGTCCTATATCTTTTGTTAGTGTTTTGGGAGCTTGCAGTCATG
CAGGGCTTGTTGAGGAGGGGAAGATGTTATTTGAATCTATGCGTAAAGAG
CATATGGTACGTCCTAGCGTGGAGCATTATGCTTGTATGGTAGATCTTCT
TGGTCGTGCTAATAAGTTAGAAGAAGCAGCCAAGATTATAGAAGATTTGA
GAATTGAACCGGGACCTAAGGTTTGGGGTTCATTGCTTGGATCGTGTCGG
ATTCATTGTAATGTTGAGCTTGCTGAGAGAGCAAGCAAAGGCTTTTTGAG
CTTGAGCCTACAATGCAGGGAATTATGTACTTC
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