FC932388

Overview
NameFC932388
Unique NameFC932388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length624
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2229 contig Ccv1_Contig2229:42..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_CANGA (60S ribosomal protein L7 OS=Candida glabrata GN=RPL7 PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 2.811e-57
Identity = 109/209 (52.15%), Postives = 150/209 (71.77%), Query Frame = 1
Query:    7 PESVLKK----QKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            PES LKK    +K++EE+  A+      +K    + R  I  R   + KE+   E+ +I  KR+AK  G +YV+ + KL+F++RI+GIN I PK +K+LQLLRL QI +G F+KV KAT  +L  +EPYV YGYP+  +VR+L+YKRG+GK++KQRIAL+DN+I+E  LGKFGI+ ++DLI EI+TVGPHFK+A +FLWPFKL  P GG
Sbjct:    9 PESQLKKAKYDEKKSEEFLKARAARRVANK----QKRAAILERNAAHQKEYEAAERAVIDAKREAKASGSYYVEAQPKLVFVVRIKGINKIPPKPRKVLQLLRLTQINSGTFVKVTKATSELLKLIEPYVAYGYPSYSTVRQLVYKRGHGKINKQRIALSDNAIVEANLGKFGILSIDDLIHEIVTVGPHFKQANNFLWPFKLSNPSGG 213          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7_DROME (60S ribosomal protein L7 OS=Drosophila melanogaster GN=RpL7 PE=2 SV=2)

HSP 1 Score: 210.305 bits (534), Expect = 6.481e-54
Identity = 111/208 (53.37%), Postives = 150/208 (72.12%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAK-KQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGK-FGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            VPES LK  K+     +A+ K+ L+ +    L  ++ +  RA++Y  E+ + E+  I+L+R AK +  FYV  EAKL F++RIRGIN + PK +K+LQL RLRQI NGVF+K+NKAT+NML   EPY+T+GYPNLKSVRELIYKRG+ K ++QR+ +TDN +IE+ L +   I C+EDL+ EI TVGP+FK A +FLWPFKL  P GG
Sbjct:   17 VPESKLKFSKKQISKRVAESKRRLKKAAVIALRKKENLV-RAEKYQNEYIKAEQREIKLRRLAKKRNQFYVPAEAKLAFVVRIRGINKVAPKVRKVLQLFRLRQINNGVFIKLNKATINMLRIAEPYITWGYPNLKSVRELIYKRGFVKHNRQRVPITDNFVIERKLRQAHQIQCVEDLVHEIFTVGPNFKYASNFLWPFKLNTPTGG 223          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL72_PARTE (60S ribosomal protein L7 2 OS=Paramecium tetraurelia GN=Rpl7-2 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.463e-53
Identity = 105/210 (50.00%), Postives = 148/210 (70.48%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEW--ALAKK--QELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            VPE+V KK +R+ +   A+AK+  + L  +K  + +  K     A+ Y  E+   +K L+   R AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K++ QRI +T+N++IE+ LGK GI  +EDLI EI TVGPHFKEA  FLW FKL+ P GG
Sbjct:   14 VPENVAKKTQRDSKLRDAVAKRRTERLAANKTRRAQWEKT----AQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGG 219          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL71_PARTE (60S ribosomal protein L7 1 OS=Paramecium tetraurelia GN=Rpl7-1 PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.463e-53
Identity = 105/210 (50.00%), Postives = 148/210 (70.48%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEW--ALAKK--QELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPLGG 621
            VPE+V KK +R+ +   A+AK+  + L  +K  + +  K     A+ Y  E+   +K L+   R AK +GGFYV  EAKL+ ++RIRGIN ++P+ ++ L+LL+LRQ+ N  F++VNKAT+ M+ +VEPYVTYGYP+   ++ LIYKRGY K++ QRI +T+N++IE+ LGK GI  +EDLI EI TVGPHFKEA  FLW FKL+ P GG
Sbjct:   14 VPENVAKKTQRDSKLRDAVAKRRTERLAANKTRRAQWEKT----AQAYEAEYKAADKSLVDNLRKAKTEGGFYVPAEAKLILVVRIRGINTLNPQVRQTLRLLKLRQLHNAAFVRVNKATIEMIRKVEPYVTYGYPSRAVIKNLIYKRGYAKINGQRIPITNNNVIEQQLGKVGIHSVEDLIHEITTVGPHFKEANRFLWAFKLRGPRGG 219          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7A_SCHPO (60S ribosomal protein L7-A OS=Schizosaccharomyces pombe GN=rpl7a PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.351e-51
Identity = 101/199 (50.75%), Postives = 139/199 (69.85%), Query Frame = 1
Query:    7 PESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKL 603
            PE +LKK+K NE     + ++    K+ + ++RK  + RA+ +   + ++E+  I+L R AK KG  +V  E KLLF+IRI G+  + PK +K+L+LLRL +I N VF++ NKA   ML  VEPYV YG PNL SVRELIYKRG+GK++ QRIAL+DN++IE+ALGK+ +I +ED+I EI  VG HFKE   FLWPF L
Sbjct:   15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEVTKFLWPFTL 213          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL71_ARATH (60S ribosomal protein L7-1 OS=Arabidopsis thaliana GN=RPL7A PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.818e-41
Identity = 87/204 (42.65%), Postives = 128/204 (62.75%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKLKAPL 615
            +PE VLKK+K  +E A  +K++LE     K + +     R + +  EF  +E  +I++K+  K         ++ L+FIIRI+G N + PKTK+IL  L+L+ +F GVF K   +    L +V+PYVTYGYPN KSV++LIYK+G   ++   + LTDN+IIE+ALG+  I+ +EDL+ EI  VG HF+E   FL P KL  P+
Sbjct:   12 IPEIVLKKRKNRDELAFIRKKQLELGNSGKKKKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPV 215          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7L_PONAB (60S ribosomal protein L7-like 1 OS=Pongo abelii GN=RPL7L1 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 81/200 (40.50%), Postives = 126/200 (63.00%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKL 603
            VPE++LKK+K  +     + ++   +KK + + + L + R + +  +   Q++ +++L+R         +  +  L F++RI  I+ +    ++ +  LRL++IF+GVF+KV    + ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLI EI   G HF+E   FL PF L
Sbjct:   12 VPENLLKKRKAYQALKATQAEQALLAKKEQRKGKGLRFKRLESFLHDSWRQKRDMVRLRRLEMKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLRPFHL 211          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7L_HUMAN (60S ribosomal protein L7-like 1 OS=Homo sapiens GN=RPL7L1 PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 8.504e-38
Identity = 81/200 (40.50%), Postives = 125/200 (62.50%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKL 603
            VPE++LKK+K  +     + ++   +KK + + + L + R + +  +   Q++  ++L+R         +  +  L F++RI  I+ +    ++ +  LRL++IF+GVF+KV    + ML  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLI EI   G HF+E   FL PF L
Sbjct:   12 VPENLLKKRKAYQALKATQAKQALLAKKEQKKGKGLRFKRLESFLHDSWRQKRDKVRLRRLEVKPHALELPDKHSLAFVVRIERIDGVSLLVQRTIARLRLKKIFSGVFVKVTPQNLKMLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKTIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKHFQEISWFLCPFHL 211          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7L_PIG (60S ribosomal protein L7-like 1 OS=Sus scrofa GN=RPL7L1 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.095e-36
Identity = 80/200 (40.00%), Postives = 125/200 (62.50%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKL 603
            VPE++LKK+K  +     + ++    KK + + ++L + R + +  +   Q +  ++L+R      G  V  +  L F++RI  I+ +    ++ +  LRL++IF+GVF++V   T+  L  VEPYVT+G+PNLKSVRELI KRG  K+  + I LTDN++IE+ LGKFG+IC+EDLI EI   G +F+    FL PF+L
Sbjct:   13 VPENLLKKRKAYQALKATQAKQALLQKKEQRKGKELKFKRLEWFLHDSWRQLRDRVRLRRLEVKPHGLEVPDKHSLAFVVRIERISGVSSVVQRTIARLRLKKIFSGVFMQVTPQTIKTLRIVEPYVTWGFPNLKSVRELILKRGQAKVKNKIIPLTDNTVIEEHLGKFGVICLEDLIHEIAFPGKNFQAISGFLRPFQL 212          
BLAST of FC932388 vs. ExPASy Swiss-Prot
Match: RL7L_MOUSE (60S ribosomal protein L7-like 1 OS=Mus musculus GN=Rpl7l1 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.773e-35
Identity = 76/200 (38.00%), Postives = 124/200 (62.00%), Query Frame = 1
Query:    4 VPESVLKKQKRNEEWALAKKQELETSKKNKLESRKLIYNRAKQYAKEFAEQEKVLIQLKRDAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLLRLRQIFNGVFLKVNKATMNMLHRVEPYVTYGYPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIREIMTVGPHFKEAKHFLWPFKL 603
            VPE++LKK+K  +     + ++   +K+ + + ++  + R + +  +   Q++  ++++R         V  +  L F+IR+  I  +    K  +  L L+++F+GVF+KV   ++ ML  VEPYVT+G+PNLKSVRELI KRG  K++ + + LTDN++IE+ LG+FG+IC+EDLI EI   G HF+E   FL PF L
Sbjct:   13 VPENLLKKRKAYQALKATQAKQALLAKRER-KGKQFRFRRLESFVHDSWRQQRDKVRVQRLEVKPRALEVPDKHPLAFVIRMERIEGVSLLVKSTIMKLGLKKLFSGVFVKVTPQSVRMLRTVEPYVTWGFPNLKSVRELILKRGQAKINNKTVPLTDNTVIEEHLGRFGVICLEDLIHEIAFPGKHFQEVSSFLCPFLL 211          
The following BLAST results are available for this feature:
BLAST of FC932388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL7_CANGA2.811e-5752.1560S ribosomal protein L7 OS=Candida glabrata GN=RP... [more]
RL7_DROME6.481e-5453.3760S ribosomal protein L7 OS=Drosophila melanogaste... [more]
RL72_PARTE2.463e-5350.0060S ribosomal protein L7 2 OS=Paramecium tetraurel... [more]
RL71_PARTE2.463e-5350.0060S ribosomal protein L7 1 OS=Paramecium tetraurel... [more]
RL7A_SCHPO1.351e-5150.7560S ribosomal protein L7-A OS=Schizosaccharomyces ... [more]
RL71_ARATH4.818e-4142.6560S ribosomal protein L7-1 OS=Arabidopsis thaliana... [more]
RL7L_PONAB2.238e-3840.5060S ribosomal protein L7-like 1 OS=Pongo abelii GN... [more]
RL7L_HUMAN8.504e-3840.5060S ribosomal protein L7-like 1 OS=Homo sapiens GN... [more]
RL7L_PIG2.095e-3640.0060S ribosomal protein L7-like 1 OS=Sus scrofa GN=R... [more]
RL7L_MOUSE1.773e-3538.0060S ribosomal protein L7-like 1 OS=Mus musculus GN... [more]

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Properties
Property NameValue
Genbank descriptionC34208A12EF PostHarveN Citrus clementina cDNA clone C34208A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932388 ID=FC932388; Name=FC932388; organism=Citrus clementina; type=EST; length=624bp
CCAGTTCCAGAGTCTGTCTTGAAGAAGCAGAAGAGGAATGAGGAATGGGC
TTTGGCAAAGAAGCAGGAGCTTGAAACTTCCAAGAAGAACAAGCTCGAGA
GTAGGAAGCTGATTTACAATAGGGCTAAGCAGTATGCAAAGGAGTTTGCT
GAGCAGGAAAAGGTGTTGATTCAATTGAAGCGTGATGCTAAATTGAAAGG
AGGGTTTTATGTTGACCCTGAAGCTAAGCTTTTGTTTATCATCCGTATCC
GTGGTATCAATGCCATTGACCCAAAGACAAAGAAGATTTTGCAGCTTTTA
CGTTTAAGACAGATCTTCAATGGAGTTTTTCTTAAAGTGAACAAAGCTAC
CATGAACATGCTTCATAGGGTTGAACCTTACGTCACCTATGGATACCCCA
ATTTGAAGAGTGTTAGGGAGCTCATTTACAAGAGGGGATATGGAAAGCTA
GATAAGCAGAGAATTGCTTTGACCGATAACTCAATTATTGAGAAGGCTTT
GGGCAAGTTCGGTATCATCTGCATGGAAGACCTGATCCGTGAGATTATGA
CAGTGGGACCTCATTTTAAGGAGGCTAAACACTTTTTATGGCCATTTAAG
CTCAAGGCACCATTGGGTGGCCTG
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