FC932419
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16 Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 2 Query: 149 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 484 +PL + + YF S F+DR NNEQ+RM++I + +L + TG+E++L EP FV++KR R P + TP+ YYV++ SIYQAP L ++ + R+ ++ ++ + +T Sbjct: 53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRMSLST 176
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2) HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15 Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 2 Query: 116 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445 I +++ W+ + L + DYF+ S FYDRT NN+ LRM+ +I+P S+L +MTGIE++++ EP ++IRK+ R P++V YY++ +IYQAP++ ++ S+R+ Sbjct: 9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14 Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 2 Query: 104 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEK 505 D+T I +R W+ + L + +YF+ S FY NNE L+M+S + LD+ SQL ++TGI++++ P L+VI+K+ R +V P+ Y+V + +IY AP + + R+ A + QKA T K+EK Sbjct: 10 DLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALT----KIEK 145
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12 Identity = 40/124 (32.26%), Postives = 76/124 (61.29%), Query Frame = 2 Query: 116 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 478 + FR+ W + ++++ + DYF + FY+ N+Q+RM++I + + L M GI+Y+L +P LF+I K++R+ V+P+ YYV++GS++QAP + ++ +R+ AL ++ AF Sbjct: 19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPLRNAF 140
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12 Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 116 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 457 I F DQ +L + PLD + +YF+ S FYD++CNNE L+M++ LD S+L M GI Y + S E LFVIRK G T + YY++ G +Y AP +++ R+G ++ Sbjct: 8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11 Identity = 38/122 (31.15%), Postives = 75/122 (61.48%), Query Frame = 2 Query: 122 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 478 FR+ W + ++R+ + DYF ++FY+ N+Q++M++I + + L M GI+Y+L +P L+++ K++R+ V+P+ YYV++GS++QAP + + +R+ AL ++ AF Sbjct: 21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGALEPLRNAF 140
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11 Identity = 33/104 (31.73%), Postives = 61/104 (58.65%), Query Frame = 2 Query: 170 IFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445 + +YF+LS FYDRT NN+QL M+ + +L +MTG+ ++++ EP ++IRK+ + P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11 Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 2 Query: 137 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445 W+ ++ L + + DYF+ S F+D+T NN ++M+ + L +L+K+ GIEY+L+ V EP +V+RK++R G ++VT + YY++ ++YQAP +V R+ Sbjct: 16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148 The following BLAST results are available for this feature:
BLAST of FC932419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932419 ID=FC932419; Name=FC932419; organism=Citrus clementina; type=EST; length=637bpback to top |