FC932419

Overview
NameFC932419
Unique NameFC932419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length637
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_USTMA (Mediator of RNA polymerase II transcription subunit 6 OS=Ustilago maydis GN=MED6 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.276e-16
Identity = 42/124 (33.87%), Postives = 71/124 (57.26%), Query Frame = 2
Query:  149 YPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIH------------PLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTT 484
            +PL  + +  YF  S F+DR  NNEQ+RM++I               +  +L + TG+E++L    EP  FV++KR R  P + TP+  YYV++ SIYQAP L ++ + R+   ++ ++ + +T
Sbjct:   53 HPLTEHNVMAYFATSPFFDRRSNNEQIRMQNIANGIQNLSGGMGAKQEEQELKRFTGLEFVLVHSREPTCFVVQKRWRTSPTETTPLAAYYVINDSIYQAPDLYSILATRLQSTVYALRMSLST 176          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_DEBHA (Mediator of RNA polymerase II transcription subunit 6 OS=Debaryomyces hansenii GN=MED6 PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.178e-15
Identity = 43/120 (35.83%), Postives = 74/120 (61.67%), Query Frame = 2
Query:  116 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMR--------SIHPLDI--SQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445
            I +++  W+  + L    + DYF+ S FYDRT NN+ LRM+        +I+P     S+L +MTGIE++++   EP  ++IRK+ R  P++V     YY++  +IYQAP++ ++ S+R+
Sbjct:    9 IQWKNPEWIQQFGLFTGNVLDYFSESPFYDRTSNNQVLRMQFQFQQIPPNINPQKYLQSKLVEMTGIEFIIAASREPDFWIIRKQTRLSPKQVNIEQDYYIIGANIYQAPKVYDILSSRL 128          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_SCHPO (Mediator of RNA polymerase II transcription subunit 6 OS=Schizosaccharomyces pombe GN=med6 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.830e-14
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 2
Query:  104 DMTGICFRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLDI----SQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLEK 505
            D+T I +R   W+ +   L    + +YF+ S FY    NNE L+M+S  + LD+    SQL ++TGI++++     P L+VI+K+ R    +V P+  Y+V + +IY AP    + + R+  A +  QKA T    K+EK
Sbjct:   10 DLTSIQWRMPEWVQSMGGLRTENVLEYFSQSPFYSHKSNNEMLKMQSQFNALDLGDLNSQLKRLTGIQFVIIHERPPFLWVIQKQNRLNENEVKPLTVYFVCNENIYMAPNAYTLLATRMLNATYCFQKALT----KIEK 145          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CAEEL (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis elegans GN=mdt-6 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.895e-12
Identity = 40/124 (32.26%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  116 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 478
            + FR+  W   + ++++ + DYF    + FY+    N+Q+RM++I    + + L  M GI+Y+L    +P LF+I K++R+    V+P+  YYV++GS++QAP + ++  +R+  AL  ++ AF
Sbjct:   19 VSFRNPQWPPNF-INKDNVLDYFCNQANAFYEMNSCNQQIRMQNIVNRTVEECLRTMPGIQYVLW-YSQPPLFIICKQRRNNVTNVSPIAYYYVINGSVHQAPDMYSLVQSRLLGALEPLRNAF 140          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ENCCU (Mediator of RNA polymerase II transcription subunit 6 OS=Encephalitozoon cuniculi GN=MED6 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.393e-12
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = 2
Query:  116 ICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-IHPLD-ISQLSKMTGIEYML-SEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRAL 457
            I F DQ +L + PLD   + +YF+ S FYD++CNNE L+M++    LD  S+L  M GI Y + S   E  LFVIRK    G    T +  YY++ G +Y AP   +++  R+G ++
Sbjct:    8 ISFVDQRFLGSKPLDDTNVLEYFSGSPFYDKSCNNEILKMQTQFRGLDQKSKLFSMVGIFYEVESSNHEKTLFVIRKAYNHGDTAET-LGMYYIIHGHVYAAPTNYSIYRCRMGDSM 123          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_CAEBR (Mediator of RNA polymerase II transcription subunit 6 OS=Caenorhabditis briggsae GN=mdt-6 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.424e-11
Identity = 38/122 (31.15%), Postives = 75/122 (61.48%), Query Frame = 2
Query:  122 FRDQLWLNTYPLDRNMIFDYFTL--SLFYDRTCNNEQLRMRSIHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAF 478
            FR+  W   + ++R+ + DYF    ++FY+    N+Q++M++I    + + L  M GI+Y+L    +P L+++ K++R+    V+P+  YYV++GS++QAP +  +  +R+  AL  ++ AF
Sbjct:   21 FRNPQWPANF-INRDNVLDYFCNQGNVFYEMNSCNQQIKMQNITNRSVDECLRNMQGIQYVLW-YSQPPLYIVCKQRRNNATNVSPIAYYYVINGSVHQAPDMHTLVQSRLLGALEPLRNAF 140          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_PICST (Mediator of RNA polymerase II transcription subunit 6 OS=Pichia stipitis GN=MED6 PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.429e-11
Identity = 33/104 (31.73%), Postives = 61/104 (58.65%), Query Frame = 2
Query:  170 IFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445
            + +YF+LS FYDRT NN+QL M+            +       +L +MTG+ ++++   EP  ++IRK+ +  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   27 VLEYFSLSPFYDRTSNNQQLMMQFQFQQIQIPVNTTFQQFFQEKLREMTGVVFVIAYNREPDFWIIRKQLQLDPQNAVTLQDYYIIGANVYQAPKVYDVLSSRL 130          
BLAST of FC932419 vs. ExPASy Swiss-Prot
Match: MED6_ASHGO (Mediator of RNA polymerase II transcription subunit 6 OS=Ashbya gossypii GN=MED6 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 38/134 (28.36%), Postives = 68/134 (50.75%), Query Frame = 2
Query:  137 WLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRS-------------------------------IHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKRKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 445
            W+ ++ L  + + DYF+ S F+D+T NN  ++M+                                 + L   +L+K+ GIEY+L+ V EP  +V+RK++R G ++VT +  YY++  ++YQAP   +V   R+
Sbjct:   16 WIQSFGLRTDNVLDYFSQSPFFDKTSNNHVVKMQQQFSQQMPPAPQTARPKAAPSAERQAIWDRYPAYALLEQELAKLKGIEYVLAHVREPDFWVVRKQRRAG-DRVTALNDYYIIGANVYQAPTAYSVVQNRL 148          
The following BLAST results are available for this feature:
BLAST of FC932419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
MED6_USTMA3.276e-1633.87Mediator of RNA polymerase II transcription subuni... [more]
MED6_DEBHA6.178e-1535.83Mediator of RNA polymerase II transcription subuni... [more]
MED6_SCHPO6.830e-1434.29Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEEL4.895e-1232.26Mediator of RNA polymerase II transcription subuni... [more]
MED6_ENCCU6.393e-1239.32Mediator of RNA polymerase II transcription subuni... [more]
MED6_CAEBR1.424e-1131.15Mediator of RNA polymerase II transcription subuni... [more]
MED6_PICST2.429e-1131.73Mediator of RNA polymerase II transcription subuni... [more]
MED6_ASHGO4.144e-1128.36Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionC34208D07EF PostHarveN Citrus clementina cDNA clone C34208D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932419 ID=FC932419; Name=FC932419; organism=Citrus clementina; type=EST; length=637bp
GGAAACGCACAGCATTCACTCATCAAACTTAAACATGGCGACGCCACCAC
CGGGGGCGAACCTCGAGGGCGCACCACCGGCGGCCCCACCGCCACCGGGT
ACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCTAAACACATA
CCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGTCTCTGTTTT
ATGATAGGACTTGCAACAATGAACAGCTCAGAATGCGGTCCATCCACCCT
CTAGACATCTCTCAACTCTCGAAAATGACCGGCATTGAATACATGCTTAG
TGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCGAAAAAGGGATG
GTCCCGAGAAAGTCACACCAATGCTCACTTATTATGTATTGGATGGTTCA
ATTTACCAAGCACCACAACTTTGCAATGTCTTTTCGGCTAGAATTGGACG
GGCTCTCCACTATATACAGAAGGCTTTTACAACTGCTGCCTCGAAGTTGG
AGAAGATTGGATATGTTGATGCTGAAAATGATGGAGGTACCCCTCTCCAC
TCAAAGGCTGGTAAAGAGACAATTGATTTGAAAAGAAGTAAGCGAGTAGA
TCAAATACTTGCCCTCCTACAGCGCAAGCTACCACCG
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