FC932425

Overview
NameFC932425
Unique NameFC932425
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR_HUMAN (2,4-dienoyl-CoA reductase, mitochondrial OS=Homo sapiens GN=DECR1 PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 2.576e-15
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  341 GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            G  +I++N AAGNF+   E LSPN ++T+ DI   GT  +  E  K L K             L+I+     T S + +           ++++LA EWG  Y +R N I PGPI      ++L
Sbjct:  136 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIK------AQKGAAFLSITTIYAETGSGFVVPSASAKAGVEAMSKSLAAEWG-KYGMRFNVIQPGPIKTKGAFSRL 252          

HSP 2 Score: 46.595 bits (109), Expect = 2.576e-15
Identity = 27/79 (34.18%), Postives = 41/79 (51.90%), Query Frame = 3
Query:  111 KGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKLWNQLLSILG 344
            +GKVA ITGGG+G+G  ++T     GA   I  R+  VL A    + S  G K    + DVR  +  +   ++L+ + G
Sbjct:   58 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 136          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR_MOUSE (2,4-dienoyl-CoA reductase, mitochondrial OS=Mus musculus GN=Decr1 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.547e-15
Identity = 39/124 (31.45%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  341 GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            G  D+++N AAGNF+  +E L+PNG++T+ DI   GT  +  E  K L K             L I+     + S + +           + ++LA EWG  Y +R N I PGPI      ++L
Sbjct:  136 GHPDVVINNAAGNFISPSERLTPNGWKTITDIVLNGTAYVTLEIGKQLIK------AQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGR-YGMRFNIIQPGPIKTKGAFSRL 252          

HSP 2 Score: 45.8246 bits (107), Expect = 9.547e-15
Identity = 34/111 (30.63%), Postives = 49/111 (44.14%), Query Frame = 3
Query:   15 QTQHNHKDKQQKRSDKEISKMSLESPFKADILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKLWNQLLSILG 344
            +T +  KD  Q +  + + K  L      D  +GKVA ITGGG+G+G  ++T     GA   I  R   VL A    + S  G K      DVR  +       +L+ + G
Sbjct:   30 KTLYQSKDAPQSKFFQPVLKPMLPP----DAFQGKVAFITGGGTGLGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCDVRDPDMVHNTVLELIKVAG 136          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: DECR_RAT (2,4-dienoyl-CoA reductase, mitochondrial OS=Rattus norvegicus GN=Decr1 PE=1 SV=2)

HSP 1 Score: 55.8398 bits (133), Expect = 3.535e-14
Identity = 40/124 (32.26%), Postives = 59/124 (47.58%), Query Frame = 2
Query:  341 GKLDILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPIGDTPGMNKL 712
            G  D+++N AAGNF+  +E LSPNG++T+ DI   GT  +  E  K L K             L I+     + S + +           + ++LA EWG  Y +R N I PGPI      ++L
Sbjct:  136 GHPDVVINNAAGNFISPSERLSPNGWKTITDIVLNGTAYVTIEIGKQLIK------AQKGAAFLAITTIYAESGSGFVMPSSSAKSGVEAMNKSLAAEWGR-YGMRFNIIQPGPIKTKGAFSRL 252          

HSP 2 Score: 42.743 bits (99), Expect = 3.535e-14
Identity = 27/79 (34.18%), Postives = 37/79 (46.84%), Query Frame = 3
Query:  111 KGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLDAAVSALRS-LGIKAVGFEGDVRRQEHAKKLWNQLLSILG 344
            +GKVA ITGGG+G+G  ++T     GA   I  R   VL A    + S  G K      DVR  +       +L+ + G
Sbjct:   58 QGKVAFITGGGTGLGKAMTTFLSSLGAQCVIASRNIDVLKATAEEITSKTGNKVYAIRCDVRDPDMVHNTVLELIKVAG 136          
BLAST of FC932425 vs. ExPASy Swiss-Prot
Match: YWC4_CAEEL (Uncharacterized oxidoreductase W01C9.4 OS=Caenorhabditis elegans GN=W01C9.4 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 4.605e-14
Identity = 39/117 (33.33%), Postives = 60/117 (51.28%), Query Frame = 2
Query:  338 FGKL-DILVNAAAGNFLVSAEDLSPNGFRTVMDIDSVGTFTMCHEALKYLKKXXXXXXXXXXXXILNISATLHYTASWYQIHXXXXXXXXXXITRNLALEWGADYDIRVNGIAPGPI 685
            FGK+ +ILVN AAGNF+++ E LS N + T++DI   GTF +  E  K                I +I+A      + + +           +T++LA EW + Y +R N ++PGPI
Sbjct:  101 FGKVPEILVNNAAGNFIMATELLSSNAYGTIIDIVLKGTFNVTTELGK------RCIQNKTGASITSITAGYARAGAPFIVPSAVSKAGVETMTKSLATEW-SKYGLRFNAVSPGPI 210          

HSP 2 Score: 41.9726 bits (97), Expect = 4.605e-14
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 3
Query:   84 ESPFKAD-ILKGKVALITGGGSGIGFEISTQFGKHGASVAIMGRRKQVLD 230
            +SP   D   KGK+ L+TGGG+GIG  I+T F    A+V I  RR + L+
Sbjct:   14 KSPVLRDGAFKGKLVLVTGGGTGIGKAIATTFAHLRATVVIAARRMEKLE 63          
The following BLAST results are available for this feature:
BLAST of FC932425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
DECR_HUMAN2.576e-1532.262,4-dienoyl-CoA reductase, mitochondrial OS=Homo s... [more]
DECR_MOUSE9.547e-1531.452,4-dienoyl-CoA reductase, mitochondrial OS=Mus mu... [more]
DECR_RAT3.535e-1432.262,4-dienoyl-CoA reductase, mitochondrial OS=Rattus... [more]
YWC4_CAEEL4.605e-1433.33Uncharacterized oxidoreductase W01C9.4 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC34208E01EF PostHarveN Citrus clementina cDNA clone C34208E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932425 ID=FC932425; Name=FC932425; organism=Citrus clementina; type=EST; length=720bp
AAAAAGAAAAAAAACAGACACAACACAACCACAAGGACAAGCAGCAAAAG
CGGTCAGATAAAGAAATAAGCAAAATGTCGTTGGAATCTCCGTTCAAGGC
CGATATATTGAAAGGCAAAGTCGCTTTGATCACAGGAGGTGGTTCGGGAA
TTGGGTTTGAGATATCAACCCAATTCGGTAAACATGGAGCTTCAGTTGCA
ATCATGGGACGTCGCAAGCAAGTCCTTGATGCTGCTGTTTCTGCTCTTCG
GTCTCTTGGAATCAAGGCTGTTGGCTTTGAAGGAGATGTTCGTAGGCAGG
AACATGCAAAAAAGTTGTGGAATCAACTTTTGAGCATTTTGGGAAGCTTG
ACATTCTTGTGAATGCTGCGGCCGGCAACTTTCTTGTATCAGCTGAGGAT
TTGTCCCCTAATGGGTTTCGAACAGTTATGGATATTGATTCTGTCGGCAC
ATTCACAATGTGCCATGAAGCACTTAAATATCTTAAAAAGGGTGGACCTG
GGAGAAGCTCAGCTGGTGGTGGATCCATTTTGAACATTAGTGCTACTTTA
CATTATACAGCTTCTTGGTACCAAATACATGTAGCTGCAGCCAAGGCAGC
TGTTGATGCCATTACCAGAAACTTGGCACTGGAATGGGGAGCTGACTATG
ATATTCGAGTCAATGGAATTGCCCCAGGCCCCATCGGTGATACCCCGGGC
ATGAATAAACTTTGCACTGA
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