FC932427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16 Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T D +L AF ++G ++DS ++ DRETGRSRGFGFVTF I +N QDLDGR I VN A +R Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16 Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +F +++YVGNL+W ++L F E G +VD+ V+ DR++GRSRGFGFVT+SS I +L+ DL+GR IRV+ A ARP Sbjct: 183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 268
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16 Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +F +++YVGNL+W ++L F E G +VD+ V+ DR++GRSRGFGFVT+SS I +L+ DL+GR IRV+ A ARP Sbjct: 189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 274
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16 Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 +++YVGNLSW D +L + F E G +V++ V+ DR++GRS+GFGFVT+ S I +L+ DLDGR+IRV+ A ARP Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16 Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 ++YVGNL W + L F E G +V++ V+ DRETGRSRGFGFVT S I+AL+ Q+L+GR IRVN+A RP Sbjct: 245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 4.338e-16 Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 ++YVGNL W L F E G +V + V+ DRETGRSRGFGFVT SS I AL+ Q LDGR +RVN+A RP Sbjct: 150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.666e-16 Identity = 44/85 (51.76%), Postives = 52/85 (61.18%), Query Frame = 3 Query: 21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 TF Q +IYVGN+ W D L F E G +V + V+ DRETGRSRGFGFVT +S I L+ Q LDGR IRVN+A R Sbjct: 225 TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.666e-16 Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 3 Query: 21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 TF +IYVGN+ W D L F E G +V + V+ DRE+GRSRGFGFVT SS I L+ Q LDGR IRVN A RP Sbjct: 186 TFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 1.262e-15 Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T+DE L+ F +FG+++DS ++ DRE+GRSRGFGFVTF I +N ++LDGR I VN A +R Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15 Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 + +VG L+W T D L F +FG ++DS ++ DRETGRSRGFGFVTF I+ +N ++LDGR I VN A +R Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85 The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bpback to top |