FC932427

Overview
NameFC932427
Unique NameFC932427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.491e-16
Identity = 40/79 (50.63%), Postives = 52/79 (65.82%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T D +L  AF ++G ++DS ++ DRETGRSRGFGFVTF         I  +N QDLDGR I VN A +R
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +F   +++YVGNL+W    ++L   F E G +VD+ V+ DR++GRSRGFGFVT+SS       I +L+  DL+GR IRV+ A ARP
Sbjct:  183 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 268          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3
Query:   21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +F   +++YVGNL+W    ++L   F E G +VD+ V+ DR++GRSRGFGFVT+SS       I +L+  DL+GR IRV+ A ARP
Sbjct:  189 SFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIRVSPAEARP 274          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.947e-16
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +++YVGNLSW   D +L + F E G +V++ V+ DR++GRS+GFGFVT+ S       I +L+  DLDGR+IRV+ A ARP
Sbjct:  204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARP 284          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC3_ARATH (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.322e-16
Identity = 41/80 (51.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            ++YVGNL W   +  L   F E G +V++ V+ DRETGRSRGFGFVT S        I+AL+ Q+L+GR IRVN+A  RP
Sbjct:  245 RVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.338e-16
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            ++YVGNL W      L   F E G +V + V+ DRETGRSRGFGFVT SS       I AL+ Q LDGR +RVN+A  RP
Sbjct:  150 RVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERP 229          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.666e-16
Identity = 44/85 (51.76%), Postives = 52/85 (61.18%), Query Frame = 3
Query:   21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            TF Q  +IYVGN+ W   D  L   F E G +V + V+ DRETGRSRGFGFVT +S       I  L+ Q LDGR IRVN+A  R
Sbjct:  225 TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVAEDR 309          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.666e-16
Identity = 44/86 (51.16%), Postives = 51/86 (59.30%), Query Frame = 3
Query:   21 TFFQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            TF    +IYVGN+ W   D  L   F E G +V + V+ DRE+GRSRGFGFVT SS       I  L+ Q LDGR IRVN A  RP
Sbjct:  186 TFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAAEERP 271          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.262e-15
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T+DE L+  F +FG+++DS ++ DRE+GRSRGFGFVTF         I  +N ++LDGR I VN A +R
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.153e-15
Identity = 38/79 (48.10%), Postives = 51/79 (64.56%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            + +VG L+W T D  L   F +FG ++DS ++ DRETGRSRGFGFVTF         I+ +N ++LDGR I VN A +R
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
GRP1_SINAL1.491e-1650.63Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
ROC1_NICSY1.947e-1647.6729 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
ROC1_NICPL1.947e-1647.6730 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_ARATH1.947e-1649.38Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
ROC3_ARATH3.322e-1651.2531 kDa ribonucleoprotein, chloroplastic OS=Arabido... [more]
ROC1_SPIOL4.338e-1652.5028 kDa ribonucleoprotein, chloroplastic OS=Spinaci... [more]
ROC4_NICSY5.666e-1651.7631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC3_NICSY5.666e-1651.1628 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP8_ARATH1.262e-1548.10Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]
GRP10_BRANA2.153e-1548.10Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]

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Properties
Property NameValue
Genbank descriptionC34208E03EF PostHarveN Citrus clementina cDNA clone C34208E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bp
GATCACACCTCGTGACTCCCACTTTCTTTCAAATGTCCAAGATCTACGTC
GGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGG
TGAGTTCGGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTG
GTCGCTCCCGTGGATTCGGTTTCGTCACCTTCTCTTCCGCTGAGGAGGCC
GAGGCCGCCATCAACGCTCTCAACGAGCAGGACCTCGATGGTCGTCGCAT
CCGCGTCAACCTCGCCAACGCCCGCCCCGGCGGTGGCTTCGGGGGTGGTA
ACGGTGGTGCCGGTGGTGGCCGCTGGTAAACGTTGATCAGTGACCCGAAA
AAGTGCGCGATGGTTATGCAGAACGAGAAAAACGTGACATATTGACGCTT
AGCGTTGGTAACGGTGCTTTGTGTGCCCTGAGAAATCAGTCACAGCTCAC
AAGGCAGTTACTAGAGTTACTCAAGAAGTAGATAGTATTTTCCCTCGGTG
TTATACCTCAAGGACATTTGGAAATTTATTCAGGGCCGATCGATTCGTGC
ACTGATACACAAA
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