FC932427
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12 Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K+++G L++ T++ESL F ++G I + +V+ DRET RSRGFGFVTF + + A+N + +DGR+IRV+ A Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12 Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K+++G L++ T+++ L AF ++G I + +V+ DRET RSRGFGFVTF + + A+N + +DGR+IRV+ A Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12 Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3 Query: 27 FQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278 + +K+Y+G LS T + SL+ AF F + ++ VM ++ TGRSRG+GFV F S I+A+N Q+L+G I VN+A P Sbjct: 28 YMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12 Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K+++G L+ T++++L A FG++G IV+ ++M DRET +SRGF FVTF S +N + LDG+ I+V A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12 Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K+++G L+ T++++L A FG++G IV+ ++M DRET +SRGF FVTF S +N + LDG+ I+V A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3) HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12 Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K+++G L+ T++++L A FG++G IV+ ++M DRET +SRGF FVTF S +N + LDG+ I+V A Sbjct: 9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12 Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 K++VG LS+ T ++ L F ++G I + +V+ DRET RSRGFGFVTF + + +N + +DGR+IRV+ A Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3) HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11 Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 3 Query: 42 IYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275 IYVGNLS+ ++ESL A F E+G++ + VDRETGR RGFGFV S I AL+ + GR ++VN A R Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR 80
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11 Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3 Query: 36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266 +KI+VG L +HT+D SLR F FG+I +++V+ DR+TG+SRG+GFVT S N +DGR+ VNLA Sbjct: 11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11 Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 3 Query: 39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRV 257 K+++G L+ T ++SL A FG++G I + ++M DRET +SRGF F+TF S + +N + LDG+ I+V Sbjct: 9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKV 81 The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 65
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Sequences
The
following sequences are available for this feature:
EST sequence >FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bpback to top |