FC932427

Overview
NameFC932427
Unique NameFC932427
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length563
Libraries
Library NameType
PostHarveNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBB_XENLA (Cold-inducible RNA-binding protein B OS=Xenopus laevis GN=cirbp-B PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.306e-12
Identity = 34/76 (44.74%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L++ T++ESL   F ++G I + +V+ DRET RSRGFGFVTF +       + A+N + +DGR+IRV+ A
Sbjct:    6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAMNGKAVDGRQIRVDQA 81          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBA_XENLA (Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-A PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 2.910e-12
Identity = 33/76 (43.42%), Postives = 53/76 (69.74%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L++ T+++ L  AF ++G I + +V+ DRET RSRGFGFVTF +       + A+N + +DGR+IRV+ A
Sbjct:    6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA 81          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.800e-12
Identity = 35/84 (41.67%), Postives = 52/84 (61.90%), Query Frame = 3
Query:   27 FQMSKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANARP 278
            +  +K+Y+G LS  T + SL+ AF  F  + ++ VM ++ TGRSRG+GFV F S       I+A+N Q+L+G  I VN+A   P
Sbjct:   28 YMSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVAKDWP 111          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_RAT (Heterogeneous nuclear ribonucleoprotein G OS=Rattus norvegicus GN=Rbmx PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L+  T++++L A FG++G IV+ ++M DRET +SRGF FVTF S          +N + LDG+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQA 84          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_PANTR (Heterogeneous nuclear ribonucleoprotein G OS=Pan troglodytes GN=RBMX PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L+  T++++L A FG++G IV+ ++M DRET +SRGF FVTF S          +N + LDG+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_HUMAN (Heterogeneous nuclear ribonucleoprotein G OS=Homo sapiens GN=RBMX PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 6.483e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K+++G L+  T++++L A FG++G IV+ ++M DRET +SRGF FVTF S          +N + LDG+ I+V  A
Sbjct:    9 KLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: CIRBP_RANCA (Cold-inducible RNA-binding protein OS=Rana catesbeiana GN=cirbp PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.466e-12
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            K++VG LS+ T ++ L   F ++G I + +V+ DRET RSRGFGFVTF +       +  +N + +DGR+IRV+ A
Sbjct:    7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGMNGKTVDGRQIRVDQA 82          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBPB_ANASP (Putative RNA-binding protein rbpB OS=Anabaena sp. (strain PCC 7120) GN=rbpB PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.106e-11
Identity = 37/78 (47.44%), Postives = 48/78 (61.54%), Query Frame = 3
Query:   42 IYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLANAR 275
            IYVGNLS+  ++ESL A F E+G++    + VDRETGR RGFGFV   S       I AL+  +  GR ++VN A  R
Sbjct:    3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEALDGAEWMGRDLKVNKAKPR 80          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: RBM38_XENTR (RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 3
Query:   36 SKIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRVNLA 266
            +KI+VG L +HT+D SLR  F  FG+I +++V+ DR+TG+SRG+GFVT S            N   +DGR+  VNLA
Sbjct:   11 TKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAAERACKDPN-PIIDGRKANVNLA 86          
BLAST of FC932427 vs. ExPASy Swiss-Prot
Match: HNRPG_BOVIN (Heterogeneous nuclear ribonucleoprotein G OS=Bos taurus GN=RBMX PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.444e-11
Identity = 30/73 (41.10%), Postives = 48/73 (65.75%), Query Frame = 3
Query:   39 KIYVGNLSWHTSDESLRAAFGEFGNIVDSIVMVDRETGRSRGFGFVTFSSXXXXXXXINALNEQDLDGRRIRV 257
            K+++G L+  T ++SL A FG++G I + ++M DRET +SRGF F+TF S       +  +N + LDG+ I+V
Sbjct:    9 KLFIGGLNLETDEKSLEATFGKYGRISEVLLMKDRETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKV 81          
The following BLAST results are available for this feature:
BLAST of FC932427 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CIRBB_XENLA1.306e-1244.74Cold-inducible RNA-binding protein B OS=Xenopus la... [more]
CIRBA_XENLA2.910e-1243.42Cold-inducible RNA-binding protein A OS=Xenopus la... [more]
RT19_ARATH3.800e-1241.6740S ribosomal protein S19, mitochondrial OS=Arabid... [more]
HNRPG_RAT6.483e-1242.11Heterogeneous nuclear ribonucleoprotein G OS=Rattu... [more]
HNRPG_PANTR6.483e-1242.11Heterogeneous nuclear ribonucleoprotein G OS=Pan t... [more]
HNRPG_HUMAN6.483e-1242.11Heterogeneous nuclear ribonucleoprotein G OS=Homo ... [more]
CIRBP_RANCA8.466e-1243.42Cold-inducible RNA-binding protein OS=Rana catesbe... [more]
RBPB_ANASP1.106e-1147.44Putative RNA-binding protein rbpB OS=Anabaena sp. ... [more]
RBM38_XENTR1.444e-1146.75RNA-binding protein 38 OS=Xenopus tropicalis GN=rb... [more]
HNRPG_BOVIN1.444e-1141.10Heterogeneous nuclear ribonucleoprotein G OS=Bos t... [more]

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Properties
Property NameValue
Genbank descriptionC34208E03EF PostHarveN Citrus clementina cDNA clone C34208E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC932427 ID=FC932427; Name=FC932427; organism=Citrus clementina; type=EST; length=563bp
GATCACACCTCGTGACTCCCACTTTCTTTCAAATGTCCAAGATCTACGTC
GGAAACCTTTCATGGCACACCAGCGACGAGTCGCTGCGCGCGGCCTTCGG
TGAGTTCGGCAACATTGTCGACTCTATCGTCATGGTTGACCGTGAGACTG
GTCGCTCCCGTGGATTCGGTTTCGTCACCTTCTCTTCCGCTGAGGAGGCC
GAGGCCGCCATCAACGCTCTCAACGAGCAGGACCTCGATGGTCGTCGCAT
CCGCGTCAACCTCGCCAACGCCCGCCCCGGCGGTGGCTTCGGGGGTGGTA
ACGGTGGTGCCGGTGGTGGCCGCTGGTAAACGTTGATCAGTGACCCGAAA
AAGTGCGCGATGGTTATGCAGAACGAGAAAAACGTGACATATTGACGCTT
AGCGTTGGTAACGGTGCTTTGTGTGCCCTGAGAAATCAGTCACAGCTCAC
AAGGCAGTTACTAGAGTTACTCAAGAAGTAGATAGTATTTTCCCTCGGTG
TTATACCTCAAGGACATTTGGAAATTTATTCAGGGCCGATCGATTCGTGC
ACTGATACACAAA
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